PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma41g00710.1 | ||||||||
Common Name | ZOSMA_41G00710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ARF | ||||||||
Protein Properties | Length: 658aa MW: 73331.9 Da PI: 8.0674 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76 | 4.1e-24 | 112 | 213 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++ +t+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + Zosma41g00710.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldhsVDPP--VQTVLARDVHGEQWKFRHIYRGTPRRHLLTTGWSTFVNQKKLMAGDSIVFL--RA 201 89***************************99743333..349************************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++el+v+++r+ Zosma41g00710.1 202 ENGELRVGIRRA 213 9999******97 PP | |||||||
2 | Auxin_resp | 113.4 | 2.1e-37 | 280 | 363 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fev Y+Prast+eF+vk++ v+k++++++++GmRfkm fetedss++++ +Gt++gv+ +dp+rWp+S+Wr+L+ Zosma41g00710.1 280 AANLATNGQPFEVAYYPRASTPEFCVKASTVRKSTRIQWTAGMRFKMPFETEDSSRISWfMGTISGVQFSDPIRWPQSPWRVLQ 363 7899******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-36 | 105 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.01E-29 | 105 | 214 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.49E-21 | 111 | 212 | No hit | No description |
Pfam | PF02362 | 4.8E-22 | 112 | 213 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-22 | 112 | 214 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.366 | 112 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-32 | 280 | 363 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 15.551 | 569 | 648 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 658 aa Download sequence Send to blast |
MKDSANYLDS HLWHACAGGM VQMPPVNTKV FYFPQGHAEH AHGNVDFGIA PKFPSQILCR 60 VLAINFLADP GTDEVFAKIH LAPVKLNDFG DLNLVNDGVD IREEVQEKLA SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDHSVDPPVQ TVLARDVHGE QWKFRHIYRG TPRRHLLTTG 180 WSTFVNQKKL MAGDSIVFLR AENGELRVGI RRAKRGIAGE CCEPPSGWNT STMANCRPTP 240 YGNLSGFLTE EDNFSKVLGS NVNNTGRGKE RITAATVIEA ANLATNGQPF EVAYYPRAST 300 PEFCVKASTV RKSTRIQWTA GMRFKMPFET EDSSRISWFM GTISGVQFSD PIRWPQSPWR 360 VLQVTWDEPD LLQNVKRVSP WLVELVSTLP PIHISPFSPP RKKLRHHPNF DAHHPTPTFV 420 GKLVGPPPVN NNTSLYCLSN RTPAGIQGAR HGHFGSSFSD LHFNKLQSSP MGIIPSTGFH 480 HYIERSGPMN RNHDYFSNSF TNTATECGSN TKIQPASFLL FGKTIRTTEI SSETPSPVGM 540 GNSWTDDSFP NQSWMKERHQ AVEMNSPEMG HCKVFMESED VGRTLDLSVL DSYEELCLKL 600 TDMFGLPESN RKTHVCYRNS TGAVKYAGDE PFGEFKMSAR RLMIVMDSGG ESARARW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 8e-80 | 8 | 384 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010253698.1 | 0.0 | PREDICTED: auxin response factor 18-like | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A0K9P4T1 | 0.0 | A0A0K9P4T1_ZOSMR; Auxin response factor | ||||
STRING | XP_010253698.1 | 0.0 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Zosma41g00710.1 |
Publications ? help Back to Top | |||
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