PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma415g00190.1
Common NameZOSMA_415G00190
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 382aa    MW: 42422.3 Da    PI: 5.9425
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma415g00190.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-161360148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg W++eEde+l  +++ +G g+W+++++   + R++k+c++rw +yl
  Zosma415g00190.1 13 RGLWSPEEDEKLSSYITTHGHGCWSSVPKQADLQRCGKSCRLRWINYL 60
                      788*******************************************97 PP
2Myb_DNA-binding49.11.3e-1566109146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg++T+ E+  +vd+++ lG++ W+ Ia++++ gRt++++k++w++
  Zosma415g00190.1  66 RGSFTAHEERVIVDVHRILGNR-WAQIAKYLP-GRTDNEVKNFWNS 109
                       89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-25463IPR009057Homeodomain-like
PROSITE profilePS5129416.72860IPR017930Myb domain
SuperFamilySSF466897.49E-2810107IPR009057Homeodomain-like
SMARTSM007174.3E-111262IPR001005SANT/Myb domain
PfamPF002497.2E-141360IPR001005SANT/Myb domain
CDDcd001677.90E-101660No hitNo description
PROSITE profilePS5129424.28261115IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2364116IPR009057Homeodomain-like
SMARTSM007176.6E-1465113IPR001005SANT/Myb domain
PfamPF002495.0E-1366109IPR001005SANT/Myb domain
CDDcd001671.36E-1068108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGHHCCTKQK VKRGLWSPEE DEKLSSYITT HGHGCWSSVP KQADLQRCGK SCRLRWINYL  60
RPDLRRGSFT AHEERVIVDV HRILGNRWAQ IAKYLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPTTHNLKSS STSTNASSST TTVPVLPILA SSCSITPADN TTTTSSTKHL SQFPETPSPL  180
FTINNSNRNT IKSLDINHHP SFLTLPLTNH ADNAHGTAPN LHDYNPADQS NNIGGFVSFK  240
DETHFTVVPS LTDNINFRTS SLNSSLCHAI FSSSSLDRPA DVGILDECST WEVPLPASMK  300
EINNGASVLE QQVHEDPIVP KTNFVDANLD NLDQKCQDFD IPLIGWNFDL DLVETELMNC  360
EAEFGDYGDV SAVMEQLQWE C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-30131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P5680.0A0A0K9P568_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97513545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-78myb domain protein 67