PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma40g00450.1 | ||||||||
Common Name | ZOSMA_40G00450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C3H | ||||||||
Protein Properties | Length: 479aa MW: 52329.4 Da PI: 7.7556 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.4 | 7.4e-11 | 142 | 166 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ Zosma40g00450.1 142 GEKDCAHYMLTRTCKFGDTCKFDHP 166 7889********************9 PP | |||||||
2 | zf-CCCH | 27.9 | 4e-09 | 194 | 219 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C++f++t Ck+G +CkF+H++ Zosma40g00450.1 194 GVPDCPYFMKTEKCKFGYSCKFNHPK 219 6899********************96 PP | |||||||
3 | zf-CCCH | 35.3 | 2e-11 | 238 | 262 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tG+Ck+G++C F+H++ Zosma40g00450.1 238 EPICSFYSKTGICKFGANCIFNHPK 262 799********************96 PP | |||||||
4 | zf-CCCH | 37 | 5.8e-12 | 301 | 324 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 ++ +C+f+++tG CkyG+rC+F+H Zosma40g00450.1 301 GEQECSFYLKTGSCKYGARCRFNH 324 6789******************** PP | |||||||
5 | zf-CCCH | 42.9 | 7.9e-14 | 377 | 399 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+++++tG Ck+Gd+CkF+H+ Zosma40g00450.1 377 PPCDYYMKTGACKFGDQCKFHHP 399 79********************9 PP | |||||||
6 | zf-CCCH | 33.6 | 6.6e-11 | 429 | 454 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +t +C+f+++tGtCky + CkF H+p Zosma40g00450.1 429 GTIICPFYLKTGTCKYDAACKFDHPP 454 6889********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.188 | 140 | 168 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-4 | 140 | 167 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-5 | 141 | 167 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-8 | 142 | 166 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.404 | 192 | 220 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 192 | 219 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-7 | 194 | 219 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-5 | 197 | 221 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.643 | 235 | 263 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.8E-6 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-8 | 238 | 262 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-6 | 238 | 263 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.8E-5 | 240 | 261 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.145 | 299 | 327 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-6 | 299 | 326 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-9 | 301 | 324 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.67E-6 | 302 | 326 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 305 | 325 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-7 | 373 | 401 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.004 | 373 | 401 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.1E-8 | 373 | 400 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.8E-11 | 377 | 399 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.8E-6 | 378 | 399 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-6 | 427 | 454 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.981 | 428 | 455 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 429 | 454 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 429 | 454 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.2E-5 | 430 | 452 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence Send to blast |
MASNQHSKYI TAASSSRYTN VAPGTDAYTR YLGEESARYA SMDMASSSTL NLGVGTDVGV 60 NAYMRSIWGV PSSVEDGIGA MGPVTDSMLG IKRQVEALYY HNALGTHNSI GHSEALYSTN 120 SFAKRPRVES ASLLPIYPQR PGEKDCAHYM LTRTCKFGDT CKFDHPLWVP EGGIPDWKEV 180 PVVSSSDLLP ERQGVPDCPY FMKTEKCKFG YSCKFNHPKD KAKTEIIDPS TLPERPTEPI 240 CSFYSKTGIC KFGANCIFNH PKDLHSLATG SNTNTSVNDA INVPFFPALL HNTKGLPIRP 300 GEQECSFYLK TGSCKYGARC RFNHQDWNVA AGLTGQTMYQ IPGAMHSYAS LIPGIDPSLT 360 QTLAVVPAVY PHRPHAPPCD YYMKTGACKF GDQCKFHHPV DRSASITYAT QISHPAVKLT 420 LAGLPRHEGT IICPFYLKTG TCKYDAACKF DHPPPGELMT MPSNEGAISV DLTKTETS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010260864.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Swissprot | Q941Q3 | 1e-155 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A0K9P5E5 | 0.0 | A0A0K9P5E5_ZOSMR; Zinc finger CCCH domain-containing protein 37 | ||||
STRING | XP_010260864.1 | 0.0 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5816 | 37 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-157 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Zosma40g00450.1 |