PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma40g00390.1
Common NameZOSMA_40G00390
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 333aa    MW: 37216.6 Da    PI: 8.2737
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma40g00390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.75.7e-50181531128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPtdeel+++yL++kv+ ++    +vi+++d++kvePwdL++  ++ +  ++ewyfFs++dkky+tg+r+nrat  g+Wkatg+dk+
  Zosma40g00390.1  18 VPPGFRFHPTDEELLNYYLRRKVAYQHS---DVITDIDLNKVEPWDLKErcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATVVGFWKATGRDKP 108
                      69***********************995...55**************953444443456*********************************** PP

              NAM  92 vlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ +        +++ +g++ktLvfy grap+g+k++W+mheyrl
  Zosma40g00390.1 109 IYLSggsnvvdgGHKRIGMRKTLVFYMGRAPTGQKSHWIMHEYRL 153
                      ***9766666655556***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5413179IPR003441NAC domain
PROSITE profilePS5100554.99318179IPR003441NAC domain
PfamPF023651.0E-2719153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEEGEGEAAG LLTTALSVPP GFRFHPTDEE LLNYYLRRKV AYQHSDVITD IDLNKVEPWD  60
LKERCRIGSG PQNEWYFFSH KDKKYPTGTR TNRATVVGFW KATGRDKPIY LSGGSNVVDG  120
GHKRIGMRKT LVFYMGRAPT GQKSHWIMHE YRLYHDDRHS KSDQIIQGDG WVVCRVFKKK  180
NYHHSIHSHQ HQYQRGEELH RGALMATDGN NNPIWEFGHH NSIIQQLLIN PDPMEPGLTS  240
GGGGGGGDLN FNIGDWSMLD KLVSSSHQNL DQLINHHGRI GVHGGGAYYN NYMQQPQSTT  300
VMMNTYTGAP AASGGGGGGG LMLQYHLGFQ NN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-491418113167NO APICAL MERISTEM PROTEIN
1ut4_B6e-491418113167NO APICAL MERISTEM PROTEIN
1ut7_A6e-491418113167NO APICAL MERISTEM PROTEIN
1ut7_B6e-491418113167NO APICAL MERISTEM PROTEIN
4dul_A6e-491418113167NAC domain-containing protein 19
4dul_B6e-491418113167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965525.18e-92NAC domain-containing protein 76
SwissprotQ5Z6B64e-82NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A0K9P5D90.0A0A0K9P5D9_ZOSMR; Putative NAC domain-containing protein
STRINGGSMUA_Achr2P20020_0014e-92(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92973046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.34e-80NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]