PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma408g00130.1 | ||||||||
Common Name | ZOSMA_408G00130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB_related | ||||||||
Protein Properties | Length: 487aa MW: 52618 Da PI: 10.5212 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.8 | 5e-08 | 187 | 232 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+ WT Ed l av+ +G g+W+ I + Rt q+ rw Zosma408g00130.1 187 RKFWTHVEDAELTAAVEVHGEGNWHIILKDYKHERTSSQLSQRWSL 232 678*****************************88**********65 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-11 | 180 | 235 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.008 | 181 | 238 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-11 | 184 | 236 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-8 | 186 | 236 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.16E-12 | 188 | 235 | No hit | No description |
Pfam | PF13921 | 6.8E-6 | 190 | 241 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MKGKITEDGI ARVFQRYKPE TVIAVLQEIG TISTSKIDWH SLVKTTSSGI SCPREYQMLW 60 RHLAYSHSLE QIANNASTEP LSDESDIEFE LELSPSISNV QNLEAEAHTE ALMTSAIAKN 120 SNVPSIEAPL LINITREILA NDPSSDNHAA SKNIVFPVLV PKYSMPSTKL ATRTRSVKNV 180 DPVKKKRKFW THVEDAELTA AVEVHGEGNW HIILKDYKHE RTSSQLSQRW SLLKKRREDN 240 NRSSADPQNK IFESNFISTN AALSLALDPQ SNRGKMKIKT QATSLVVASN PSDVSHTLFQ 300 KASIPSQLAI GKKVVSPKLT FEPPSIGTIN LIQQAALAAG GRKANSSTAA SHFKAAQSKN 360 AVHMGRVDLL PVACGHASKT SPLAKLLPRQ SNIIQNKLAA TSIPISDSTN NRSVPPNIPA 420 NGSRNVPSQA VASSPDKLPS LIALPSYVAP PSISCKLPSA SKRAKPLSAG KSKSKVNSLG 480 KSKQKP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9P339 | 0.0 | A0A0K9P339_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4684 | 37 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09710.1 | 1e-54 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma408g00130.1 |