PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma408g00130.1
Common NameZOSMA_408G00130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB_related
Protein Properties Length: 487aa    MW: 52618 Da    PI: 10.5212
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma408g00130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85e-08187232146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r+ WT  Ed  l  av+ +G g+W+ I +     Rt  q+  rw  
  Zosma408g00130.1 187 RKFWTHVEDAELTAAVEVHGEGNWHIILKDYKHERTSSQLSQRWSL 232
                       678*****************************88**********65 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-11180235IPR009057Homeodomain-like
PROSITE profilePS5129414.008181238IPR017930Myb domain
SuperFamilySSF466892.15E-11184236IPR009057Homeodomain-like
SMARTSM007174.1E-8186236IPR001005SANT/Myb domain
CDDcd116603.16E-12188235No hitNo description
PfamPF139216.8E-6190241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MKGKITEDGI ARVFQRYKPE TVIAVLQEIG TISTSKIDWH SLVKTTSSGI SCPREYQMLW  60
RHLAYSHSLE QIANNASTEP LSDESDIEFE LELSPSISNV QNLEAEAHTE ALMTSAIAKN  120
SNVPSIEAPL LINITREILA NDPSSDNHAA SKNIVFPVLV PKYSMPSTKL ATRTRSVKNV  180
DPVKKKRKFW THVEDAELTA AVEVHGEGNW HIILKDYKHE RTSSQLSQRW SLLKKRREDN  240
NRSSADPQNK IFESNFISTN AALSLALDPQ SNRGKMKIKT QATSLVVASN PSDVSHTLFQ  300
KASIPSQLAI GKKVVSPKLT FEPPSIGTIN LIQQAALAAG GRKANSSTAA SHFKAAQSKN  360
AVHMGRVDLL PVACGHASKT SPLAKLLPRQ SNIIQNKLAA TSIPISDSTN NRSVPPNIPA  420
NGSRNVPSQA VASSPDKLPS LIALPSYVAP PSISCKLPSA SKRAKPLSAG KSKSKVNSLG  480
KSKQKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P3390.0A0A0K9P339_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-54MYB_related family protein