PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma3g00870.1 | ||||||||
Common Name | ZOSMA_3G00870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 198aa MW: 22452.2 Da PI: 9.7683 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.4 | 1.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl Zosma3g00870.1 14 RGSWTKEEDRRLISYIRAHGEGCWRSLPKASGLQRCGKSCRLRWINYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE +v+++ + G++ W+ Iar ++ gRt++++k++w+++ Zosma3g00870.1 67 RGNFTPEEVTTIVKLHSLIGNK-WSFIARNLP-GRTDNEIKNHWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.39 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.29E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.549 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.1E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.87E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MGPSPCCENE HINRGSWTKE EDRRLISYIR AHGEGCWRSL PKASGLQRCG KSCRLRWINY 60 LRPDLKRGNF TPEEVTTIVK LHSLIGNKWS FIARNLPGRT DNEIKNHWNT HIKRKLLPTK 120 QTTVIDHRKI NSTTTTTTTS NGSSSSSDYG EDQSRHGRDL ELDLDLELSI SLPFYSTNSK 180 TTFPVPNLHE RGSTVGF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-28 | 9 | 116 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light, UV, cold, drought, ethylene, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), cadmium (CdCl(2)), high salt (NaCl), and cytokinins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022985891.1 | 5e-74 | myb-related protein 308-like | ||||
Swissprot | O49608 | 1e-71 | MYB32_ARATH; Transcription factor MYB32 | ||||
TrEMBL | A0A0K9P3M1 | 1e-143 | A0A0K9P3M1_ZOSMR; Transcription factor MYB32 | ||||
STRING | XP_008799190.1 | 8e-73 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 4e-70 | myb domain protein 7 |
Link Out ? help Back to Top | |
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Phytozome | Zosma3g00870.1 |