PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma3g00470.1
Common NameZOSMA_3G00470
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 302aa    MW: 34399.7 Da    PI: 7.1303
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma3g00470.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12e-08109154346
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                       WT+eEd+ + +   ++  +   +W +Ia+ ++ g+++ ++++++  
   Zosma3g00470.1 109 TWTKEEDKTFENSLVRYTEEtpeRWVKIASLLP-GKSPFEVVDHYKA 154
                      6*****************99*************.***********75 PP
2Myb_DNA-binding48.91.5e-15234278347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++d+ +++G+g+W++I+r    +Rt+ q+ s+ qky
   Zosma3g00470.1 234 PWTEEEHRRFLDGLERFGKGDWRSISRNAVVTRTPTQVASHAQKY 278
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.4E-9106158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-6108157IPR009057Homeodomain-like
CDDcd001671.45E-7109156No hitNo description
PfamPF002493.1E-7109155IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-11109163IPR009057Homeodomain-like
PROSITE profilePS500907.027110156IPR017877Myb-like domain
PROSITE profilePS5129419.165227283IPR017930Myb domain
SuperFamilySSF466893.3E-17229284IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-18230281IPR006447Myb domain, plants
SMARTSM007174.5E-11231281IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-11233277IPR009057Homeodomain-like
CDDcd001677.12E-10234279No hitNo description
PfamPF002499.1E-13234278IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MTTTDPHPSS QYPTDVTSKV VFCSFLDAHL DCTPGLHSPL LPLRSYLLPS HHLSILRRRI  60
PHFYVSLKIL QQRKRNRVRG VPGVYVFFME GGYLHDMFSS REEKPAAVTW TKEEDKTFEN  120
SLVRYTEETP ERWVKIASLL PGKSPFEVVD HYKALLQDVM DIEAGRIVIG VPGDYESGGG  180
GGEEGVDEEK EEEEEEEEEE EGFGLADSSS SLRKRGGEIR RSGKAKEERK RGVPWTEEEH  240
RRFLDGLERF GKGDWRSISR NAVVTRTPTQ VASHAQKYFI RLNSSRKKEK KRGSIHDITK  300
P*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P3K30.0A0A0K9P3K3_ZOSMR; MYB transcription factor
STRINGXP_002523835.13e-54(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.21e-51MYB family protein