PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma39g00110.1
Common NameZOSMA_39G00110
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 579aa    MW: 64823.8 Da    PI: 7.2426
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma39g00110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA481.7e-15741135
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                     C++Cg t+TplWR+gp  ++ LCnaCG ++r kg+
  Zosma39g00110.1  7 CRHCGITSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                     ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.4E-8153IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-11447No hitNo description
CDDcd002026.35E-15651No hitNo description
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.055740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.1E-12741IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.2E-13741IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MGKHGPCRHC GITSTPLWRN GPPEKPVLCN ACGSRWRTKG TLLNYTPLHA RLFFEMEENR  60
SLKSKDISDI PKVKNLQKHK HRSFHNENRY EMVECDDKGF DEDASNRSSS GSASSYAESC  120
ARIGGVDVSE TTGSAQSNLK NSIFLAPKMS ISRPKAAHVE KLTRDLNYIL QQQSSSFSMS  180
SEDDLIYENA TPMGFSEIGH GGVLIRNSKS ASAEEESEAI SALTENKSTS SGFSFSLNPQ  240
SNESSSSNKL KIDNMAQENL RRDNFSNDIF RSLDRDSHLG TMDLKDVVNF EVFTKHLTAN  300
EQHKLVKYLP SDPALPHESI INMFESLHFK ETLCNFQQLI REGVFDLSFS FGNQVDCRTL  360
NRLVLVCLSN FKWIEHYNTM KSVKYIHKCG EKKIEKRKPL LPPVSPSLKR SRHHDEQNQI  420
FREPKKVWVK NLIASKTVVI NEDIPTNSLK LDASELCTKS YSSTNDLLED NDRSCLLPGN  480
QFALPSDTSS IANPLPFKND DGLGSCLVPG NQFASPSDTS SIVNPSPFKN DNADQDLLLD  540
VRCNLSFPQA ELLSDFWKTT APNTRSVHSK VPEKVDRS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P6C80.0A0A0K9P6C8_ZOSMR; GATA transcription factor 26
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.38e-64GATA transcription factor 26