PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma397g00050.1
Common NameZOSMA_397G00050
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARR-B
Protein Properties Length: 344aa    MW: 39100 Da    PI: 7.3248
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma397g00050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.92.2e-23177229255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       p ++W + LH++F+ea++ + G+++A+Pk+ile m+v+gLt+e+v+SHLQk+Rl
  Zosma397g00050.1 177 PVVVWDSYLHDKFIEAIQII-GPHRAVPKNILEKMNVPGLTRENVASHLQKFRL 229
                       6789****************.********************************8 PP
2Response_reg60.87.2e-2191151108
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+ + +++  ++l++ +y    e+ d+ eal+ll+ +   +Dl+++Di m g++ ++ll++i +e+++lp+++++  ++ e++++ ++
  Zosma397g00050.1   9 VLVVDDDVVSLKIAGKMLRSCKY---IECIDANEALNLLRSHLncFDLVITDITMTGINDFQLLESILQENNDLPVVMMSVDDKIETMIKSIQ 98 
                       89*****************9888...678899*******988889**********************99999********************* PP

                       TTESEEEESS--HHHHH CS
      Response_reg  92 aGakdflsKpfdpeelv 108
                        Ga  +l+Kp ++e l+
  Zosma397g00050.1  99 KGAYFYLTKPLKMELLM 115
                       **********9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.99E-275122IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.5E-285143No hitNo description
SMARTSM004484.2E-217117IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011030.2128122IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.4E-189116IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.14E-1819122No hitNo description
Gene3DG3DSA:1.10.10.602.4E-21176233IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-22176229IPR006447Myb domain, plants
SuperFamilySSF466891.72E-14176233IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MESLEGLRVL VVDDDVVSLK IAGKMLRSCK YIECIDANEA LNLLRSHLNC FDLVITDITM  60
TGINDFQLLE SILQENNDLP VVMMSVDDKI ETMIKSIQKG AYFYLTKPLK MELLMTLWQF  120
VMVKNREKSI GRRDNISQNS MTPSLIDQSS RKGKNIMKTH GKQPIKENKK NSKEIKPVVV  180
WDSYLHDKFI EAIQIIGPHR AVPKNILEKM NVPGLTRENV ASHLQKFRLY LKKRMEKNFH  240
GTLGDNHGFS NPTQFVSMET PPQMAQQHMT TPITQVNSFE TYYESWAKNQ QMFNAHNSSS  300
LPVVPPNIRI ELSQPVIGMN CNHMGTGNAG EGNNQSDIEM EDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-16176233562ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P4A30.0A0A0K9P4A3_ZOSMR; Two-component response regulator ARR14
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-42response regulator 2