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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zosma38g00910.1 |
| Common Name | ZOSMA_38G00910 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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| Family |
BBR-BPC |
| Protein Properties |
Length: 310aa MW: 34739.5 Da PI: 10.1561 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zosma38g00910.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 280.6 | 7.3e-86 | 19 | 309 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflq...rdkalaernkalverdnkllalllvens 90
mdddg n+gyy++ s +++lglqlms ++ ++++r r+ ls++ a++ + dm +q + + ++ + ++ ++k++++ + ++
Zosma38g00910.1 19 MDDDGVLGiSNWGYYDQP-SKNNQLGLQLMSGMSLEQQQQRGRKPVLSSNAATFLHCDMTEQQsvrSSTSMEIIREGWLHNREKMIQMFPPTHH 111
99***99999******99.66779*********9777788888888999999999999776551114555665445555556667777765553 PP
GAGA_bind 91 lasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesad 184
+ + + t++ + e ++e+++ r+++ ++++ ++ ++ +k+kkk+k+ q k pk+ k+k ++++ + ++++ +++
Zosma38g00910.1 112 NC--YTLQFDPAPTTEQSK------EIKIEEESGR-RRTH-QDVP--QTVVPLNKKKKKNKQDQPCKIPKVAKSKIVRDEMDGG-DSSSVPKVG 192
11..112222233333333......3455555544.3333.3333..3556777788888888999*********999966554.666777777 PP
GAGA_bind 185 erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGyd 278
++ + +k++++++ng++lD+s++P+PvC+CtG++r CY+WG GGWqSaCCtt+iS++PLPvstkrrg+RiagrKmS+gafkk+LekLa+eGy+
Zosma38g00910.1 193 RSDSSVRKNTEVTINGIDLDISRIPTPVCTCTGVPRPCYRWGVGGWQSACCTTSISMHPLPVSTKRRGSRIAGRKMSHGAFKKVLEKLAGEGYN 286
88999***************************************************************************************** PP
GAGA_bind 279 lsnpvDLkdhWAkHGtnkfvtir 301
lsn +DL++hWAkHG nkfvtir
Zosma38g00910.1 287 LSNRIDLRSHWAKHGSNKFVTIR 309
**********************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MPVWLSSSDS HSIHRGLQMD DDGVLGISNW GYYDQPSKNN QLGLQLMSGM SLEQQQQRGR 60
KPVLSSNAAT FLHCDMTEQQ SVRSSTSMEI IREGWLHNRE KMIQMFPPTH HNCYTLQFDP 120
APTTEQSKEI KIEEESGRRR THQDVPQTVV PLNKKKKKNK QDQPCKIPKV AKSKIVRDEM 180
DGGDSSSVPK VGRSDSSVRK NTEVTINGID LDISRIPTPV CTCTGVPRPC YRWGVGGWQS 240
ACCTTSISMH PLPVSTKRRG SRIAGRKMSH GAFKKVLEKL AGEGYNLSNR IDLRSHWAKH 300
GSNKFVTIR*
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 137 | 157 | RRRTHQDVPQTVVPLNKKKKK |
