PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma38g00890.1 | ||||||||
Common Name | ZOSMA_38G00890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | HB-other | ||||||||
Protein Properties | Length: 155aa MW: 18149.5 Da PI: 8.988 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.8 | 5.2e-15 | 48 | 97 | 6 | 55 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +t eq+++L+++F++ ++ps +++ eL k lgL+++q+++WF N+ + Zosma38g00890.1 48 IYTMEQIQILKSAFKEYSNPSVKQKDELCKILGLEKKQISNWFYNHQTHL 97 689******************************************97644 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.36E-15 | 30 | 101 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-15 | 30 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.362 | 40 | 100 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-10 | 41 | 104 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.14E-10 | 43 | 101 | No hit | No description |
Pfam | PF00046 | 1.4E-12 | 48 | 97 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MSSTNGIGCG GDFEGNHQEG KQVENEWHTN GEEGDAPSLR KKKQKFHIYT MEQIQILKSA 60 FKEYSNPSVK QKDELCKILG LEKKQISNWF YNHQTHLKAK ERRLENSFLR NDNDRLKEEN 120 KRLWEAIKKS ICANCNNQLH EKIERLSLEE KRKC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 36 | 43 | PSLRKKKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9P710 | 1e-109 | A0A0K9P710_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 3e-28 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Zosma38g00890.1 |