PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma37g00820.1 | ||||||||
Common Name | ZOSMA_37G00820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NF-YC | ||||||||
Protein Properties | Length: 186aa MW: 21162.7 Da PI: 5.5244 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 131.2 | 3.3e-41 | 68 | 167 | 5 | 101 |
NF-YC 5 fwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 f+++q + k+++fk h+lPla+ikki+k+d+dv+mi+aeaPv++++ace+fil+lt +s+ +ee+kr+tl+k+dia a+++ difdflvd+ Zosma37g00820.1 68 FFADQthdMLKMANFKTHNLPLAKIKKIMKSDDDVHMIAAEAPVVFARACEMFILQLTRQSYGYTEESKRKTLQKTDIAMAISNNDIFDFLVDV 161 5555555588999********************************************************************************* PP NF-YC 96 vprdel 101 p++++ Zosma37g00820.1 162 LPTEDV 167 **9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.54E-28 | 37 | 158 | IPR009072 | Histone-fold |
Pfam | PF00808 | 6.4E-21 | 86 | 149 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 2.9E-33 | 87 | 163 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MDQKNDNDYS KNNNSEHNNQ NYSTSLPSPL PPVKLSDKDP YSTVVMQQQQ QQQVNNVIHY 60 HLCQQDVFFA DQTHDMLKMA NFKTHNLPLA KIKKIMKSDD DVHMIAAEAP VVFARACEMF 120 ILQLTRQSYG YTEESKRKTL QKTDIAMAIS NNDIFDFLVD VLPTEDVKEE HSGVGLGSNS 180 FYTVQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 6e-41 | 72 | 163 | 3 | 94 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020242618.1 | 8e-46 | nuclear transcription factor Y subunit C-6-like, partial | ||||
Refseq | XP_022717601.1 | 2e-45 | nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_022717602.1 | 2e-45 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q9ZVL3 | 1e-44 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A0K9P7J7 | 1e-135 | A0A0K9P7J7_ZOSMR; Nuclear transcription factor Y subunit C-2 | ||||
STRING | XP_008346078.1 | 1e-44 | (Malus domestica) | ||||
STRING | XP_008356118.1 | 1e-44 | (Malus domestica) | ||||
STRING | XP_008372003.1 | 1e-44 | (Malus domestica) | ||||
STRING | XP_002512355.1 | 1e-44 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7345 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-46 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | Zosma37g00820.1 |