PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma37g00610.1
Common NameZOSMA_37G00610
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 270aa    MW: 29897.6 Da    PI: 7.7365
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma37g00610.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.3e-141462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+d +++ G+g +W + +++ g+ R++k+c++rw++yl
  Zosma37g00610.1 14 RGPWSPEEDMKLKDFIEKNGTGgNWIAFPHKAGLMRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding42.61.4e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+ Ed l+ ++++  G++ W+ Ia++++ gRt++++k++w++
  Zosma37g00610.1  69 GQFTETEDMLICNLFATIGSR-WSVIANHLP-GRTDNDIKNYWNT 111
                      78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.221962IPR017930Myb domain
SuperFamilySSF466891.16E-2611109IPR009057Homeodomain-like
SMARTSM007172.8E-81364IPR001005SANT/Myb domain
PfamPF002497.4E-131462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-211569IPR009057Homeodomain-like
CDDcd001678.57E-81662No hitNo description
PROSITE profilePS5129421.22463117IPR017930Myb domain
SMARTSM007175.8E-1267115IPR001005SANT/Myb domain
PfamPF002491.2E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2370117IPR009057Homeodomain-like
CDDcd001675.88E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009785Biological Processblue light signaling pathway
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDMKLKDFIE KNGTGGNWIA FPHKAGLMRC GKSCRLRWLN  60
YLRPNIKHGQ FTETEDMLIC NLFATIGSRW SVIANHLPGR TDNDIKNYWN TKLKKKLLGI  120
HPPAQTRIVR SSNHHQQQPF YFSPNMDIQN FHATTHEAQL MNTATAATSA TAVPCLFQHY  180
PVKEADDQKL ELENNIKDGG GGLWSLLCNN NGVSAWGDEG GSAFNYGTSA INGCNELFLD  240
DPNSASAAAA AAAGDSYKSQ EKDMYYNYC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400425.14e-78PREDICTED: transcription factor MYB36-like
RefseqXP_023911785.17e-78transcription factor RAX2-like
RefseqXP_028555687.15e-78transcription factor RAX2-like
TrEMBLA0A0K9P5760.0A0A0K9P576_ZOSMR; Myb domain protein 94
STRINGGSMUA_Achr5P10690_0012e-77(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.13e-74MYB family protein