PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma37g00460.1

Common Name

ZOSMA_37G00460

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 423aa MW: 45775.8 Da PI: 6.2466

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma37g00460.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52	1.3e-16	211	257	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L++l+P++ K++Ka++L +A+eY+k Lq Zosma37g00460.1 211 VHNLSERRRRDRINEKMKALQKLIPNC-----NKVDKASMLDEAIEYLKTLQ 257 6***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.07E-20	204	265	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-20	204	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.362	207	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.48E-18	210	261	No hit	No description
Pfam	PF00010	3.3E-14	211	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-18	213	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MADLPSSSLS DTTNLVEIIW ENGQIMVQPQ IQSGGKPLQN TEDKDFAINQ LSNTDVSWLT 60 NYTTTDDYGI EFLSPEFTGD KSAATTSDKL QTTQDPDAVT SGFFNFSNFT RPVALHQTNL 120 QNAEKLKTLN PTDNAPVIKW DEKGIISSGK ERKVPEAAPS VPKHKIKKKL LEGNGSSNKS 180 KDPDDESADC AKKHNSCSTS STNKRSRAAE VHNLSERRRR DRINEKMKAL QKLIPNCNKV 240 DKASMLDEAI EYLKTLQFQL QMMSTMGNGG AGMHMPPATM MMQQHMAPFP QIGVGMPGMP 300 GMPGMSGMPG MPGMGMLDVN GRSLMMRVPA QYPCPSIPLT TASQYQPNGV PVIGHPVQSV 360 ANGSPYFPLP THSIATPVAT TAMDFGPEVG VKTPEMACKN SETGHKVVVE EGDNDDNLCG 420 SN*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MADLPSSSLS DTTNLVEIIW ENGQIMVQPQ IQSGGKPLQN TEDKDFAINQ LSNTDVSWLT  60
NYTTTDDYGI EFLSPEFTGD KSAATTSDKL QTTQDPDAVT SGFFNFSNFT RPVALHQTNL  120
QNAEKLKTLN PTDNAPVIKW DEKGIISSGK ERKVPEAAPS VPKHKIKKKL LEGNGSSNKS  180
KDPDDESADC AKKHNSCSTS STNKRSRAAE VHNLSERRRR DRINEKMKAL QKLIPNCNKV  240
DKASMLDEAI EYLKTLQFQL QMMSTMGNGG AGMHMPPATM MMQQHMAPFP QIGVGMPGMP  300
GMPGMSGMPG MPGMGMLDVN GRSLMMRVPA QYPCPSIPLT TASQYQPNGV PVIGHPVQSV  360
ANGSPYFPLP THSIATPVAT TAMDFGPEVG VKTPEMACKN SETGHKVVVE EGDNDDNLCG  420
SN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	220	ERRRRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P561	0.0	A0A0K9P561_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3527	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	1e-37	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Zosma37g00460.1