PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma37g00410.1
Common NameZOSMA_37G00410
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 349aa    MW: 38515.1 Da    PI: 6.1707
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma37g00410.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.9e-175097148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++ +G g+W++++r  g+ R++k+c++rw +yl
  Zosma37g00410.1 50 KGLWSPEEDEKLLKHITNYGHGCWSSVPRQAGLQRCGKSCRLRWINYL 97
                     678*******************************************97 PP
2Myb_DNA-binding42.71.3e-13103145145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg +++eE++l ++++  lG++ W+ Ia+ ++ gRt++++k+ w+
  Zosma37g00410.1 103 RGTFSQEEEKLVIELHGVLGNK-WSQIASQLP-GRTDNEIKNLWN 145
                      899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.2E-2644100IPR009057Homeodomain-like
PROSITE profilePS5129424.33145101IPR017930Myb domain
SuperFamilySSF466891.24E-2848144IPR009057Homeodomain-like
SMARTSM007173.6E-124999IPR001005SANT/Myb domain
PfamPF002491.6E-145097IPR001005SANT/Myb domain
CDDcd001678.27E-115397No hitNo description
Gene3DG3DSA:1.10.10.604.7E-24101152IPR009057Homeodomain-like
PROSITE profilePS5129418.731102152IPR017930Myb domain
SMARTSM007178.2E-12102150IPR001005SANT/Myb domain
PfamPF002492.1E-12103145IPR001005SANT/Myb domain
CDDcd001671.94E-8105145No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MMTATSILPP PPCLLYPSQP PPFIVLLTLS SSRSVEESKM MDGYKQKLRK GLWSPEEDEK  60
LLKHITNYGH GCWSSVPRQA GLQRCGKSCR LRWINYLRPD LKRGTFSQEE EKLVIELHGV  120
LGNKWSQIAS QLPGRTDNEI KNLWNSSIKK KLLQRGIDPN THKSLSRLLE THDSRTTMPN  180
ARSNTGNLDN LQLSVPTSNL SSDPLLWFNN GPYPSSELNV DSEFDCSTLA SVLPSGGGST  240
LMVKQSGQTQ VSGGQYWEGG SSSTSGTSVN SCLFESGIGL FPWADMSPEE EFIKWSEFLD  300
SVEAGSTNAE GSGGHAKVET RDSGSCQQQT QFPYLSEDIY SNHFQTQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29481525108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020272342.12e-84transcription factor MYB86-like
TrEMBLA0A0K9P5560.0A0A0K9P556_ZOSMR; Uncharacterized protein
STRINGGSMUA_Achr8P18730_0012e-82(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30923385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.12e-78myb domain protein 61