PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma372g00010.1
Common NameZOSMA_372G00010
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HB-other
Protein Properties Length: 414aa    MW: 45613.7 Da    PI: 7.7492
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma372g00010.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.92.6e-0631752256
                      SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
          Homeobox 22 nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                      n  p ++    LA+k            ++ +qV +WFqNrR+  +
  Zosma372g00010.1 31 NAVPPRDVVNSLAEKFsgsaerlgkvVVQPKQVWNWFQNRRYSNR 75
                      555666666666666666666666667899***********9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-51281IPR009057Homeodomain-like
PROSITE profilePS500719.281377IPR001356Homeobox domain
CDDcd000860.004971377No hitNo description
SuperFamilySSF466899.41E-81676IPR009057Homeodomain-like
PfamPF167194.1E-34119246IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MGRPPASGAP AFRFISSEVA EMESYLKTVN NAVPPRDVVN SLAEKFSGSA ERLGKVVVQP  60
KQVWNWFQNR RYSNRSKLHK APAKLALSTT VLEDSTSHRN VTNPVHSTAA PGKKTFDNTM  120
EFEAKSVRDG AWYDVGEFLA VRNLENGDPE VQIRLSGLGI EENEWVNVRE CIRQRSLPCD  180
GIDCAAVLPG DLILCFQEGT DQALYFNAHV LDTQRRRHDM RGCRCRFLVR YDHDQSEEIV  240
PLKKICRRPE TEYRMQVLLR SRPSASDKDL NEAVQKSIRP PKLTDVNKDG ASNSNFFQAK  300
EQPLAVAVTQ MKESPVAVAV TQMKEPSVKG SVTQTKEPTI VLALSQMNEP YVAVASTHIK  360
ESPVSVAVTQ MKEPPIAVQD AAASIVDGSS LVIPGVPAID ATKNSSGCEN LQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A6e-431202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B6e-431202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A6e-431202504134SHH1 SAWADEE
4iur_B6e-431202504134SHH1 SAWADEE
4iut_A6e-431202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B6e-431202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A6e-431202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B6e-431202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A6e-431202504134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B6e-431202504134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020263723.11e-139protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_020263724.11e-139protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-114SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A0K9P5S90.0A0A0K9P5S9_ZOSMR; Sequence-specific DNA binding transcription factor
STRINGGSMUA_Achr4P18450_0011e-132(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-104sequence-specific DNA binding transcription factors;sequence-specific DNA binding