PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma371g00060.1

Common Name

ZOSMA_371G00060

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 379aa MW: 42760.3 Da PI: 8.6206

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma371g00060.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.5	4e-17	181	273	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y YA+++GFsvr +++++ + +++ ++r++ Cskeg+ + + + +rr++a +r+gC a++k+k+e ++w +++ l+HnH l+ Zosma371g00060.1 181 YYGYASKMGFSVRLGSTNYKtskdDGKKNLVMRRLLCSKEGTVDLLHPPKLGKRRKNAISRCGCFASIKIKREGmFEVWIFKHIILQHNHLLT 273 899********9876655454444567899*******999998899*****************999************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.7E-14	181	273	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MFLNSLNVID QSSPLQQPNI DLQNTIHSPN SSSIYITPPP YRPLHAQPLI PPTQRSRPQY 60 NISLDFYSIL TEKPSDCNPN ETHGNVQCSR INDFSVMPNA NYVPHHNHDT PLDNLRSPIS 120 SENNDLTGQL NAITSSVNAS PSFFVPKQST DTNSSSENVK LNSPPTVGQF YSSYSDALDQ 180 YYGYASKMGF SVRLGSTNYK TSKDDGKKNL VMRRLLCSKE GTVDLLHPPK LGKRRKNAIS 240 RCGCFASIKI KREGMFEVWI FKHIILQHNH LLTTPSKVRF LPINRSISST FRLLFQSLSE 300 VNVPVSQETV YFSSQVGGIE HMGCTQLDIS NMCRDDRVDL KNYDVDLLVE KFELKKSVQP 360 DFFYSIVKDS SDRLKHVF*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MFLNSLNVID QSSPLQQPNI DLQNTIHSPN SSSIYITPPP YRPLHAQPLI PPTQRSRPQY  60
NISLDFYSIL TEKPSDCNPN ETHGNVQCSR INDFSVMPNA NYVPHHNHDT PLDNLRSPIS  120
SENNDLTGQL NAITSSVNAS PSFFVPKQST DTNSSSENVK LNSPPTVGQF YSSYSDALDQ  180
YYGYASKMGF SVRLGSTNYK TSKDDGKKNL VMRRLLCSKE GTVDLLHPPK LGKRRKNAIS  240
RCGCFASIKI KREGMFEVWI FKHIILQHNH LLTTPSKVRF LPINRSISST FRLLFQSLSE  300
VNVPVSQETV YFSSQVGGIE HMGCTQLDIS NMCRDDRVDL KNYDVDLLVE KFELKKSVQP  360
DFFYSIVKDS SDRLKHVF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	228	234	PKLGKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P5V7	0.0	A0A0K9P5V7_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-16	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma371g00060.1