PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma36g00250.1 | ||||||||
Common Name | ZOSMA_36G00250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 232aa MW: 26724 Da PI: 9.1457 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.7e-17 | 14 | 59 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+W+ eEd++l+ +v+ +G++ Wk I ++ gRt k+c++rw ++l Zosma36g00250.1 14 GAWSREEDKKLKALVEVYGPRKWKNICTGIP-GRTSKSCRLRWINHL 59 89*****************************.************996 PP | |||||||
2 | Myb_DNA-binding | 59.7 | 6.4e-19 | 65 | 109 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + r+T+eEd ++++a++ +G++ W++Ia+ ++ gR+++ +k++w++ Zosma36g00250.1 65 KSRFTEEEDAKIIQAHAIHGNR-WSLIAKLLP-GRSDNAIKNHWNST 109 689*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.917 | 8 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-15 | 12 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.14E-29 | 13 | 106 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-15 | 14 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 14 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.10E-14 | 15 | 59 | No hit | No description |
PROSITE profile | PS51294 | 26.388 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-17 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-17 | 65 | 109 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-25 | 67 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.46E-13 | 67 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 232 aa Download sequence Send to blast |
METNGVEEDV SISGAWSREE DKKLKALVEV YGPRKWKNIC TGIPGRTSKS CRLRWINHLS 60 PSVHKSRFTE EEDAKIIQAH AIHGNRWSLI AKLLPGRSDN AIKNHWNSTL TRRLKIRRPS 120 DLTQEAFRER EDYDFMWRGG KKLCQRTVDK AAGEDDPITA LTLSINNPRQ SHVNRDHEND 180 DHDDDEKLGF DPSSPQSLDI KGFMPVIRDM IAKEVRLYHH NSYFNSHART K* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-37 | 12 | 114 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-36 | 12 | 114 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-36 | 12 | 114 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 7e-37 | 12 | 114 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 7e-37 | 12 | 114 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9P5W5 | 1e-172 | A0A0K9P5W5_ZOSMR; Myb domain protein 70 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G09230.1 | 2e-40 | myb domain protein 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma36g00250.1 |