PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma369g00010.1

Common Name

ZOSMA_369G00010

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 427aa MW: 48341.9 Da PI: 8.4635

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma369g00010.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.7	7.7e-18	176	268	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y YA+++GFsvr +++++ + ++ ++r++ Cske + + + + +rr++a +r+gC a++k+k+e +++w v+++ leHnH+l+ Zosma369g00010.1 176 YYGYASKMGFSVRLGSTNYKtskdDGKKFLVMRRLLCSKEETVDLLHPPKLGKRRKNAISRCGCFASIKIKREGmSEVWIVKHIILEHNHHLT 268 899********9876655453333455789*****99998888899******************9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.9E-15	176	268	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.5E-6	390	425	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MLLINHHPYN NLTLTPQNNI HFSPNSSSIY ITPPPYRPLH AQPLIPPTQR SRPQCNVSLD 60 FYSILTEKPS DCNPNETHGN VQCSRITDFP VMPNANYVPH HNHDTPLDNL RSPISSENND 120 LTGQLNAITS FVNASPSFFV LKQPTDTNSS SDNVKLNSPP IVGQFYSSYS DALDQYYGYA 180 SKMGFSVRLG STNYKTSKDD GKKFLVMRRL LCSKEETVDL LHPPKLGKRR KNAISRCGCF 240 ASIKIKREGM SEVWIVKHII LEHNHHLTTP SKVQFLPINH SISSTSRLLF QSLSEVNVPV 300 SQQTAYFSSQ VGGIEHMGCT QLDISNMCRD DRVDLKNYDI DLLVEEFELK KSVQPDFFYS 360 IVKVSSGRLK HVFWVDSVMI QHFKLFEDAV TFDTTYKTNV YSLIFGIFCG VNHHRKTVIF 420 GSAFLR*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MLLINHHPYN NLTLTPQNNI HFSPNSSSIY ITPPPYRPLH AQPLIPPTQR SRPQCNVSLD  60
FYSILTEKPS DCNPNETHGN VQCSRITDFP VMPNANYVPH HNHDTPLDNL RSPISSENND  120
LTGQLNAITS FVNASPSFFV LKQPTDTNSS SDNVKLNSPP IVGQFYSSYS DALDQYYGYA  180
SKMGFSVRLG STNYKTSKDD GKKFLVMRRL LCSKEETVDL LHPPKLGKRR KNAISRCGCF  240
ASIKIKREGM SEVWIVKHII LEHNHHLTTP SKVQFLPINH SISSTSRLLF QSLSEVNVPV  300
SQQTAYFSSQ VGGIEHMGCT QLDISNMCRD DRVDLKNYDI DLLVEEFELK KSVQPDFFYS  360
IVKVSSGRLK HVFWVDSVMI QHFKLFEDAV TFDTTYKTNV YSLIFGIFCG VNHHRKTVIF  420
GSAFLR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	223	229	PKLGKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9P887	0.0	A0A0K9P887_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-36	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Zosma369g00010.1