PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma34g01230.1 | ||||||||
Common Name | ZOSMA_34G01230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | TCP | ||||||||
Protein Properties | Length: 297aa MW: 31144.5 Da PI: 8.7544 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.6 | 3.7e-41 | 55 | 188 | 2 | 121 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.....k 89 ++kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s+++ +sns+s+ + Zosma34g01230.1 55 TVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStVSVSNRNGGSNSNSNsngttQ 148 689*************************************************************999998875333444444433333322231 PP TCP 90 aaksaakskksqksaasalnlakesr...............akarar 121 ++ +s+ s+ ++ +++n + + +++r++ Zosma34g01230.1 149 SS----PSSLSDYKSVHNHNQH---QlsqgaglasgpfilgKRMRSD 188 11....2222222222222222...1223444555566644222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-35 | 61 | 197 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 61 | 115 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MATPIAGTNG AASPLVDSQS CQLQLLPHQV VISTDTTDTP TTITADSNSN AVLTTVKKPP 60 SKDRHSKVDG RGRRIRMPII CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT 120 TPASFSTVSV SNRNGGSNSN SNSNGTTQSS PSSLSDYKSV HNHNQHQLSQ GAGLASGPFI 180 LGKRMRSDEE AEDREKEQGL GMSGGAGGGF GVGQFWALPA RTDMGQFWSF STPEFLQVPS 240 MNGRFAGVGL QPIGEASAAR VGNYLPVTQG QLNLLSSLSS APPATPSGRR DDDNPR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024994214.1 | 1e-89 | transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 8e-69 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A0K9P754 | 0.0 | A0A0K9P754_ZOSMR; TCP transcription factor 14 | ||||
STRING | Solyc04g009180.1.1 | 1e-78 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 7e-46 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma34g01230.1 |