PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma34g00830.1 | ||||||||
Common Name | ZOSMA_34G00830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 206aa MW: 23557.6 Da PI: 10.9484 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.2e-17 | 14 | 59 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg WT+ Ed +l + v+++G+++W++Ia+ ++ gR++k+c++rw++ Zosma34g00830.1 14 RGHWTAGEDGKLRRIVEKYGPRNWNSIAENLP-GRSGKSCRLRWFNQ 59 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 45.2 | 2.2e-14 | 66 | 108 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r +T++E+++l+ a + +G++ W++Iar ++ gRt++ +k+ w+ Zosma34g00830.1 66 RRQFTEDEEKKLITAQRVYGNK-WSLIARIFP-GRTDNAIKNQWH 108 5689******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.384 | 9 | 64 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-14 | 13 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.85E-29 | 14 | 107 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.5E-17 | 14 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-26 | 15 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.61E-13 | 17 | 58 | No hit | No description |
PROSITE profile | PS51294 | 16.622 | 65 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-12 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-12 | 66 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-19 | 68 | 114 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.82E-10 | 69 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MRISSVQTSG ACERGHWTAG EDGKLRRIVE KYGPRNWNSI AENLPGRSGK SCRLRWFNQL 60 DPRINRRQFT EDEEKKLITA QRVYGNKWSL IARIFPGRTD NAIKNQWHVI TARKRKEQKT 120 LALRRRHQYL CNNKKAFGFD TGRLFGQLSG SSSSSSFTST YIRLSNTSGE SFQVINLTEE 180 DKQGGSPEKK KSPPFIDFLK LNDIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-30 | 14 | 114 | 7 | 107 | B-MYB |
1gv2_A | 8e-30 | 14 | 114 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-29 | 14 | 114 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-29 | 14 | 114 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 7e-30 | 14 | 114 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 7e-30 | 14 | 114 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006434346.1 | 7e-59 | transcription factor MYB115 | ||||
Refseq | XP_006473036.1 | 6e-59 | transcription factor MYB115-like | ||||
Swissprot | Q5NBM8 | 3e-56 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A0K9P716 | 1e-150 | A0A0K9P716_ZOSMR; Uncharacterized protein | ||||
STRING | XP_006473036.1 | 2e-58 | (Citrus sinensis) | ||||
STRING | XP_006434346.1 | 3e-58 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 8e-56 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Zosma34g00830.1 |