PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma343g00020.1

Common Name

ZOSMA_343G00020

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

TCP

Protein Properties

Length: 435aa MW: 47206.1 Da PI: 4.3649

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma343g00020.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.9	2.6e-36	97	200	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasec..eaess 78 g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el+++ +ss+a+e+ +++++ Zosma343g00020.1 97 GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKAAIDELAELppwhptattaasgfgPSSPATEMgqDQNDE 189 89*************************************************************999998766666544444443432222222 PP TCP 79 sssasnsssg......k 89 s s + + Zosma343g00020.1 190 STS------AafafggS 200 222......12233331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-30	97	171	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.086	98	156	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MDDSFLTSCK LEEEGRKKRG SGDPKKPLRP QILAGEEEGE EEEEGNVEEE EIEEDHHRKS 60 SSDQYAVLQR RPVGMRGGHG GGEIVEVEGG HIVRSIGRKD RHSKVCTAKG PRDRRVRLSA 120 HTAIQFYDVQ DRLGYDRPSK AVDWLIKNAK AAIDELAELP PWHPTATTAA SGFGPSSPAT 180 EMGQDQNDES TSAAFAFGGS SSSFLPPSLE SDAIADTIKF FFPIQSSAAS AGERSGGGGG 240 GASIGSSSSA NLAGFHHQQY PHNILSQSQD LRLSLQSFED PILHHQQQQQ QQTCGGPSPE 300 LQSDQSSFFD TPTSVWSEPN QRFFNTGSGY GPYMPALPLH PMFGQNPFFP QRGPLQSNNI 360 NSPSFLALTD PASMATAMQQ ASVMPGDTHG FTSSGFSGFR APARIQGEEE DDDDDDCEYD 420 DDEEDEDEDH QVDI*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MDDSFLTSCK LEEEGRKKRG SGDPKKPLRP QILAGEEEGE EEEEGNVEEE EIEEDHHRKS  60
SSDQYAVLQR RPVGMRGGHG GGEIVEVEGG HIVRSIGRKD RHSKVCTAKG PRDRRVRLSA  120
HTAIQFYDVQ DRLGYDRPSK AVDWLIKNAK AAIDELAELP PWHPTATTAA SGFGPSSPAT  180
EMGQDQNDES TSAAFAFGGS SSSFLPPSLE SDAIADTIKF FFPIQSSAAS AGERSGGGGG  240
GASIGSSSSA NLAGFHHQQY PHNILSQSQD LRLSLQSFED PILHHQQQQQ QQTCGGPSPE  300
LQSDQSSFFD TPTSVWSEPN QRFFNTGSGY GPYMPALPLH PMFGQNPFFP QRGPLQSNNI  360
NSPSFLALTD PASMATAMQQ ASVMPGDTHG FTSSGFSGFR APARIQGEEE DDDDDDCEYD  420
DDEEDEDEDH QVDI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-20	103	156	1	54	Putative transcription factor PCF6
5zkt_B	4e-20	103	156	1	54	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:18816164, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00062	PBM	Transfer from AT3G15030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269\|PubMed:12931144, ECO:0000269\|PubMed:18816164}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010277724.1	1e-95	PREDICTED: transcription factor TCP4
Swissprot	Q8LPR5	9e-74	TCP4_ARATH; Transcription factor TCP4
TrEMBL	A0A0K9P7D7	0.0	A0A0K9P7D7_ZOSMR; TCP family transcription factor TCP4
STRING	XP_010277724.1	4e-95	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5839	33	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	1e-45	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

Link Out ? help Back to Top
Phytozome	Zosma343g00020.1

Publications ? help Back to Top
Schommer C, et al. Control of jasmonate biosynthesis and senescence by miR319 targets. PLoS Biol., 2008. 6(9): p. e230 [PMID:18816164] Ju Y, et al. Arabidopsis JINGUBANG Is a Negative Regulator of Pollen Germination That Prevents Pollination in Moist Environments. Plant Cell, 2016. 28(9): p. 2131-2146 [PMID:27468890] Challa KR,Aggarwal P,Nath U Activation of YUCCA5 by the Transcription Factor TCP4 Integrates Developmental and Environmental Signals to Promote Hypocotyl Elongation in Arabidopsis. Plant Cell, 2016. 28(9): p. 2117-2130 [PMID:27597774] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Li J, et al. RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis. J. Exp. Bot., 2016. 67(22): p. 6473-6480 [PMID:27838638] Sun X, et al. Activation of secondary cell wall biosynthesis by miR319-targeted TCP4 transcription factor. Plant Biotechnol. J., 2017. 15(10): p. 1284-1294 [PMID:28233945] Kubota A, et al. TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. PLoS Genet., 2017. 13(6): p. e1006856 [PMID:28628608] Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Vadde BVL,Challa KR,Nath U The TCP4 transcription factor regulates trichome cell differentiation by directly activating GLABROUS INFLORESCENCE STEMS in Arabidopsis thaliana. Plant J., 2018. 93(2): p. 259-269 [PMID:29165850] Challa KR,Rath M,Nath U The CIN-TCP transcription factors promote commitment to differentiation in Arabidopsis leaf pavement cells via both auxin-dependent and independent pathways. PLoS Genet., 2019. 15(2): p. e1007988 [PMID:30742619]