PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma340g00120.1 | ||||||||
Common Name | ZOSMA_340G00120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NAC | ||||||||
Protein Properties | Length: 321aa MW: 36426.9 Da PI: 7.8831 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.7 | 1.1e-53 | 20 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+v+yL+kk+ + ++++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+++ Zosma340g00120.1 20 LPPGFRFHPTDEELIVHYLEKKAGNLPVPV-SIIAEVDLYKFDPWELPSKANFGEQEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIY 111 79****************************.89***************99999**************************************** PP NAM 94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kk Lvfy+g+ pkg+kt+W+mheyrl Zosma340g00120.1 112 VCgGQKKVGVKKALVFYSGKPPKGVKTNWIMHEYRL 147 9867788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-64 | 12 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.367 | 20 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-27 | 21 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MHSNTMESTD SSSCSQQPHL PPGFRFHPTD EELIVHYLEK KAGNLPVPVS IIAEVDLYKF 60 DPWELPSKAN FGEQEWYFFS PRDRKYPNGV RPNRAATSGY WKATGTDKPI YVCGGQKKVG 120 VKKALVFYSG KPPKGVKTNW IMHEYRLVQS STTVAATAPS KPPKRTSLRL DDWVLCRIYQ 180 KNNINVQIRA LDHQTCCIQQ QANYLPHMNS INNTQALVDN DDNFFEGLLA KDAPISNAGR 240 YVDSVPTNRR PPTFLPFYDN QYWTDGGRFR PTVCTIPDSG EMNEHEEGAH VDHQAPTALL 300 DQMMFRQTPY SYISGHNWNP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-72 | 17 | 183 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-72 | 17 | 183 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-72 | 17 | 183 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-72 | 17 | 183 | 14 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-72 | 17 | 183 | 17 | 170 | NAC domain-containing protein 19 |
3swm_B | 6e-72 | 17 | 183 | 17 | 170 | NAC domain-containing protein 19 |
3swm_C | 6e-72 | 17 | 183 | 17 | 170 | NAC domain-containing protein 19 |
3swm_D | 6e-72 | 17 | 183 | 17 | 170 | NAC domain-containing protein 19 |
3swp_A | 6e-72 | 17 | 183 | 17 | 170 | NAC domain-containing protein 19 |
3swp_B | 6e-72 | 17 | 183 | 17 | 170 | NAC domain-containing protein 19 |
3swp_C | 6e-72 | 17 | 183 | 17 | 170 | NAC domain-containing protein 19 |
3swp_D | 6e-72 | 17 | 183 | 17 | 170 | NAC domain-containing protein 19 |
4dul_A | 5e-72 | 17 | 183 | 14 | 167 | NAC domain-containing protein 19 |
4dul_B | 5e-72 | 17 | 183 | 14 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. {ECO:0000250}. | |||||
UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00058 | PBM | Transfer from AT1G61110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021651908.1 | 1e-110 | NAC transcription factor 56-like | ||||
Swissprot | A2YMR0 | 3e-94 | NAC10_ORYSI; NAC transcription factor ONAC010 | ||||
Swissprot | Q8GY42 | 2e-94 | NAC25_ARATH; NAC transcription factor 25 | ||||
TrEMBL | A0A0K9P7F0 | 0.0 | A0A0K9P7F0_ZOSMR; Putative NAC domain-containing protein | ||||
STRING | Aquca_059_00027.1 | 1e-108 | (Aquilegia coerulea) | ||||
STRING | cassava4.1_010976m | 1e-108 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7572 | 36 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 2e-89 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Zosma340g00120.1 |