PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma33g00510.1
Common NameZOSMA_33G00510
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 311aa    MW: 35230.9 Da    PI: 7.5234
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma33g00510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.16.4e-31210265156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+ eLH++Fv+a+e+LGGs++AtPk+i+e+m v+gLt+++vkSHLQkYRl+
  Zosma33g00510.1 210 KARRCWSLELHQKFVKALERLGGSHVATPKQIREMMRVDGLTNDEVKSHLQKYRLH 265
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.31E-16207268IPR009057Homeodomain-like
PROSITE profilePS5129412.103207267IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-27208268IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-25210265IPR006447Myb domain, plants
PfamPF002498.6E-8212263IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGLPTTELCM GKRTVTIGLV AEDGDANGMK IEDLVRCLED EKQKIEMFKR ELPLCLGFIK  60
HVIDVLNDDL MKRGAQSSNA RPILEQFLPI KDDKEMMVAE KDCKDNKMNW MTSVQLWKND  120
GDDTNICSGQ NKVHRQSDVS EKVDNQPLPD LSLLTPGIVK DDSNKCFFSA TNPSTRKEHL  180
ASLFPSPNTP SSNNHNIQQQ HAYQQNCSRK ARRCWSLELH QKFVKALERL GGSHVATPKQ  240
IREMMRVDGL TNDEVKSHLQ KYRLHNQRVL LHSSSSSGNN NETEHCDEKI SSCNNPSFST  300
HFLSERKIIN *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P7K20.0A0A0K9P7K2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP181737107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.14e-42G2-like family protein