PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma33g00410.1

Common Name

ZOSMA_33G00410

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

TALE

Protein Properties

Length: 760aa MW: 82671.3 Da PI: 7.5387

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma33g00410.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.4	2.7e-09	547	584	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + Zosma33g00410.1 547 FEHflHPYPSDADKHLLARQTGLSRNQVTNWFINARVR 584 664459******************************88 PP
2	BELL	124.5	4.2e-40	409	478	3	72
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e+q++k+kLls+l+eVd+rY++y++q+q+v++sF+ v+g+gsa+pYtslA+ka+SrhFrcLkdai q+ Zosma33g00410.1 409 FEHQRRKTKLLSMLDEVDRRYNHYCDQMQMVVNSFDSVMGYGSATPYTSLAQKAMSRHFRCLKDAILAQL 478 599***************************************************************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	9.0E-62	324	476	IPR006563	POX domain
Pfam	PF07526	3.2E-51	329	474	IPR006563	POX domain
PROSITE profile	PS50071	12.519	525	588	IPR001356	Homeobox domain
CDD	cd00086	9.59E-12	528	589	No hit	No description
SMART	SM00389	1.3E-9	528	592	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.13E-17	530	595	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-28	531	594	IPR009057	Homeodomain-like
Pfam	PF05920	3.0E-18	545	584	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence Send to blast
MGIAPPQSSS ITTCNTFLVS RNIDDVRRFH HRKRRNGEDN RRIVKEVNST GSMSQGFHHQ 60 GIFGFSDGFD RSTQASNQQE QTAGSRRGGE SPGVRMQQQH TRFGDPPSLV PIETAGEDHS 120 GAVAAAMYDT QGGASMLSDM FGFQHPDGGP SATDLLASQI PSGYRFNRPP PVPTPTGDWY 180 GTTSRQATEM FLMNPSQQQQ QQQRSSSPSA VIHHNFQTTP PSGGQPPSAQ PFVMEGQGLS 240 LSLSSSLQQF EMANKAQQET ELRVREGMLY YNSGGGGGGV SSTHHHHHQN QPLLQHHQMF 300 QQSQPQGIPV GIGQSGVVGG GGPMEVVNVL RHSKYARAAQ ELLEEFCSVG RGGKGVASKL 360 NPSSSNLAGG GASTSKEAAT TTTTTTTTTS NTTTTPPPPP PALSAADKFE HQRRKTKLLS 420 MLDEVDRRYN HYCDQMQMVV NSFDSVMGYG SATPYTSLAQ KAMSRHFRCL KDAILAQLKQ 480 TCELLGDKDG GGGTGITKGE TPRLKLLEQS LRQQRAFHQM GIMEQEAWRP QRGLPERSVN 540 ILRAWLFEHF LHPYPSDADK HLLARQTGLS RNQVTNWFIN ARVRLWKPMV EEMYQQEAKE 600 EEEERGGEGS NSRSQSQKQE ISTDENDPSS SFPRLHHQQQ EHRFTPNETT TTTNQQHGGG 660 IGIGTSSSGN SFPELIGFDA HGRITGNSTN INTVVTAVTT ATAADEATNY GGTAGMVTPA 720 GTTHIRFGTS GDVSLTLGLR HAGNLPENNR FSSMRDFNG*

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence Send to blast

MGIAPPQSSS ITTCNTFLVS RNIDDVRRFH HRKRRNGEDN RRIVKEVNST GSMSQGFHHQ  60
GIFGFSDGFD RSTQASNQQE QTAGSRRGGE SPGVRMQQQH TRFGDPPSLV PIETAGEDHS  120
GAVAAAMYDT QGGASMLSDM FGFQHPDGGP SATDLLASQI PSGYRFNRPP PVPTPTGDWY  180
GTTSRQATEM FLMNPSQQQQ QQQRSSSPSA VIHHNFQTTP PSGGQPPSAQ PFVMEGQGLS  240
LSLSSSLQQF EMANKAQQET ELRVREGMLY YNSGGGGGGV SSTHHHHHQN QPLLQHHQMF  300
QQSQPQGIPV GIGQSGVVGG GGPMEVVNVL RHSKYARAAQ ELLEEFCSVG RGGKGVASKL  360
NPSSSNLAGG GASTSKEAAT TTTTTTTTTS NTTTTPPPPP PALSAADKFE HQRRKTKLLS  420
MLDEVDRRYN HYCDQMQMVV NSFDSVMGYG SATPYTSLAQ KAMSRHFRCL KDAILAQLKQ  480
TCELLGDKDG GGGTGITKGE TPRLKLLEQS LRQQRAFHQM GIMEQEAWRP QRGLPERSVN  540
ILRAWLFEHF LHPYPSDADK HLLARQTGLS RNQVTNWFIN ARVRLWKPMV EEMYQQEAKE  600
EEEERGGEGS NSRSQSQKQE ISTDENDPSS SFPRLHHQQQ EHRFTPNETT TTTNQQHGGG  660
IGIGTSSSGN SFPELIGFDA HGRITGNSTN INTVVTAVTT ATAADEATNY GGTAGMVTPA  720
GTTHIRFGTS GDVSLTLGLR HAGNLPENNR FSSMRDFNG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	3e-16	534	592	5	63	Homeobox protein Meis2
3k2a_B	3e-16	534	592	5	63	Homeobox protein Meis2
4xrs_A	2e-16	534	591	1	58	Homeobox protein Meis1
4xrs_B	2e-16	534	591	1	58	Homeobox protein Meis1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012079108.1	1e-177	BEL1-like homeodomain protein 2
Refseq	XP_012079109.1	1e-177	BEL1-like homeodomain protein 2
Swissprot	Q9SW80	1e-143	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	A0A0K9P7J5	0.0	A0A0K9P7J5_ZOSMR; BEL1-like homeodomain protein 2
STRING	XP_008813264.1	1e-175	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4433	29	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-113	BEL1-like homeodomain 2

Link Out ? help Back to Top
Phytozome	Zosma33g00410.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]