PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma330g00200.1 | ||||||||
Common Name | ZOSMA_330G00200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | LSD | ||||||||
Protein Properties | Length: 173aa MW: 18210.9 Da PI: 8.8224 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 37.3 | 4.5e-12 | 7 | 31 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr +L Y GA++VRCa+C+t+ Zosma330g00200.1 7 CAGCRSTLLYSMGATNVRCAICNTI 31 ***********************97 PP | |||||||
2 | zf-LSD1 | 46 | 8.5e-15 | 51 | 75 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+YP GA++VRC+ C+t+ Zosma330g00200.1 51 CGGCRTLLMYPNGATNVRCTRCNTI 75 ***********************97 PP | |||||||
3 | zf-LSD1 | 30.9 | 4.5e-10 | 88 | 111 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+C t+L+Y +GA +V+C +C+ Zosma330g00200.1 88 CGNCNTTLMYSFGAANVKCVVCQY 111 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.2E-13 | 4 | 34 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.9E-10 | 7 | 31 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.4E-15 | 48 | 76 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.5E-13 | 51 | 75 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.1E-8 | 86 | 114 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.6E-9 | 88 | 112 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000303 | Biological Process | response to superoxide | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0002240 | Biological Process | response to molecule of oomycetes origin | ||||
GO:0009626 | Biological Process | plant-type hypersensitive response | ||||
GO:0009862 | Biological Process | systemic acquired resistance, salicylic acid mediated signaling pathway | ||||
GO:0010104 | Biological Process | regulation of ethylene-activated signaling pathway | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0010602 | Biological Process | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | ||||
GO:0010618 | Biological Process | aerenchyma formation | ||||
GO:0043069 | Biological Process | negative regulation of programmed cell death |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MQSQIVCAGC RSTLLYSMGA TNVRCAICNT ITLVSQPPTQ STASDMAQLF CGGCRTLLMY 60 PNGATNVRCT RCNTINASRG NQVARMNCGN CNTTLMYSFG AANVKCVVCQ YITNVWGNNL 120 RPPVSVQSSL PSTSSAPPPT KTQTVVVENP KSLDGNGRMI SNVAVGVTSE KV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024022803.1 | 4e-64 | protein LSD1 | ||||
Refseq | XP_024022804.1 | 4e-64 | protein LSD1 | ||||
Refseq | XP_024022805.1 | 4e-64 | protein LSD1 | ||||
Swissprot | Q2QMB3 | 3e-49 | LOL2_ORYSJ; Protein LOL2 | ||||
Swissprot | Q6ASS2 | 4e-49 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A0K9P8B8 | 1e-120 | A0A0K9P8B8_ZOSMR; Zinc finger protein LSD1 | ||||
STRING | XP_007159613.1 | 2e-60 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.6 | 2e-48 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma330g00200.1 |
Publications ? help Back to Top | |||
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