PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma32g00890.1
Common NameZOSMA_32G00890
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NF-X1
Protein Properties Length: 1117aa    MW: 120315 Da    PI: 8.2067
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma32g00890.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.64.6e-07337354118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H+C++ CH GpC++C
  Zosma32g00890.1 337 CGRHQCESACHVGPCDSC 354
                      ****************** PP
2zf-NF-X117.77.8e-06459476118
         zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                      CG+H+C  +CH G C+pC
  Zosma32g00890.1 459 CGIHQCRDKCHDGVCGPC 476
                      ****************** PP
3zf-NF-X1193.2e-06556574119
         zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                      CG+H+Cq+lCH G CppC 
  Zosma32g00890.1 556 CGQHSCQSLCHSGHCPPCL 574
                      ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.68158222IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590161219IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.919161220IPR001841Zinc finger, RING-type
SMARTSM004380.023282300IPR000967Zinc finger, NF-X1-type
PfamPF0142218284299IPR000967Zinc finger, NF-X1-type
CDDcd060085.71E-11327375No hitNo description
PfamPF014226.4E-5337354IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0012337356IPR000967Zinc finger, NF-X1-type
CDDcd060082.37E-8391434No hitNo description
PfamPF014220.041401418IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0084401420IPR000967Zinc finger, NF-X1-type
CDDcd060081.57E-11449497No hitNo description
PfamPF014221.5E-4459476IPR000967Zinc finger, NF-X1-type
SMARTSM004384.5E-4459478IPR000967Zinc finger, NF-X1-type
PfamPF0142226517528IPR000967Zinc finger, NF-X1-type
SMARTSM00438260517552IPR000967Zinc finger, NF-X1-type
CDDcd060085.09E-9546598No hitNo description
PfamPF014227.5E-5556573IPR000967Zinc finger, NF-X1-type
SMARTSM004381.2E-4556575IPR000967Zinc finger, NF-X1-type
PfamPF0142221613630IPR000967Zinc finger, NF-X1-type
SMARTSM004380.012613631IPR000967Zinc finger, NF-X1-type
PfamPF014220.015666681IPR000967Zinc finger, NF-X1-type
SMARTSM004380.21666696IPR000967Zinc finger, NF-X1-type
PfamPF0142264698720IPR000967Zinc finger, NF-X1-type
SMARTSM004380.26705727IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1117 aa     Download sequence    Send to blast
MRPSSFEPSQ SQNDPSSTTR RDRRGRGRGR GRGCGSGRGR GRGGGGGGGS QPGAGRGERG  60
GSHGSGDFRR EWVPRPPVAI IASHTFSPIH DEGSSDANLI LPIPNGCQAG IQKHRSNRSN  120
QRPRIQTRRS DNDLPMASSS PSIPQLAQEI QDKLSKGSVE CMICCDMVGR TAAIWSCSSC  180
YSIFHLSCIK KWARSLSSKD TSSAVETSQR HGNWRCPGCQ SVQITSAKDI QYFCFCGKCR  240
DPPNDFYLTS HSCGEPCGKA LDNGSVSPIT NDPVMDDTVH RCPHVCVLQC HPGPCPPCKA  300
FAPRQLCPCG KDPIVRRCSD RKTPLSCGKP CNRLLSCGRH QCESACHVGP CDSCAVPITA  360
SCFCKKKTEI VLCGEMAVKG EVKGVDGIFS CSAICGKTLS CGNHLCNYDC HPGQCGECEL  420
SPNLVKTCYC GKTELTNSRN SCLDPIPTCS EPCGKTLLCG IHQCRDKCHD GVCGPCLVPV  480
NQKCQCGSTS RMIDCSKACD KTDPFVCVKP CGRKKNCGRH RCKERCCPLY SGNINNIIGE  540
WDPHLCQIPC DKRLRCGQHS CQSLCHSGHC PPCLETIFTE LTCSCGRTSI PPPLPCGTPF  600
PSCPESCIVP QQCGHSSTHT CHFGPCPPCP IPVAKECVGS HLVLSNVPCG SKDIRCSQLC  660
GKPRQCGLHA CTKTCHPAPC DSSSASCGSN AVSCGQTCGA PRIDCRHTCT SVCHPTTACP  720
SDRKCEFNVT ITCSCGRLSA NVPCGAGCSN AAGVGFNADT IYETTIIQRL PAPLQTVEGG  780
NGRRIPLGQR KLTCNEECAK LERNRALADA FDITPPNLNA LHFGENSIAF DSLNDFLRRD  840
PKWVMACQER FKWLVLGKKT KGSSGIIRRA HVFCPMIKEK RDVLTMMAER WKLGVKKSDW  900
EPKRFLTVYV TSKSTPPASI LGSKPGIIST ANVRIPVFDS LVDMDPRLVI SFLDMQKESD  960
MNALMLRFGT DCILVWLDGS NALAVFSDIE RAATVLKWAS NGSAYQGAVV FPPNGGGISK  1020
VNVWGARNKE LMDSNSNRNS WKKVVVAPEL NSWGGGAGSS LPLWNVNDAP ITASINQFSV  1080
LQSSTSSSSH FATATAKAQQ SEVLLSQEVE DWEDVL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12332RGRGRGRGRG
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029117298.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0K9PAU40.0A0A0K9PAU4_ZOSMR; NF-X1-type zinc finger protein NFXL1
STRINGXP_008789280.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1