PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma32g00420.1 | ||||||||
Common Name | ZOSMA_32G00420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28161.2 Da PI: 8.5661 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+ + ++G g+W++ +++ g+ R++k+c++rw +yl Zosma32g00420.1 14 KGAWTKEEDEKLIAHILKHGDGCWRSLPKEAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.3 | 1.5e-17 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Ed+l+++++ lG++ W++Ia +++ gRt++++k++w+++ Zosma32g00420.1 67 RGNFTEDEDDLIIKLHSVLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.514 | 9 | 61 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.76E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.44E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.012 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-27 | 65 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.90E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MGRSPCCEKA HTNKGAWTKE EDEKLIAHIL KHGDGCWRSL PKEAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TEDEDDLIIK LHSVLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLIKRG 120 VDPFTHKPIQ NHVENEAKVE VSSVPVEQEK SSSESSSLLQ AQSPLPPLFN DQHRCPDLNL 180 DLNLGLSISP PTTTNLPILL EPQSAQQQPA IKMEFNGQCF YCKLGLSHVS GCKCNRSEVA 240 GMFLHYRSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-30 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010028718.1 | 1e-98 | PREDICTED: myb-related protein 308 | ||||
Swissprot | P81393 | 6e-93 | MYB08_ANTMA; Myb-related protein 308 | ||||
TrEMBL | A0A0K9P8A0 | 0.0 | A0A0K9P8A0_ZOSMR; Uncharacterized protein | ||||
STRING | XP_010028718.1 | 5e-98 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 9e-87 | myb domain protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Zosma32g00420.1 |
Publications ? help Back to Top | |||
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