PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma32g00420.1
Common NameZOSMA_32G00420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 250aa    MW: 28161.2 Da    PI: 8.5661
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma32g00420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l+  + ++G g+W++ +++ g+ R++k+c++rw +yl
  Zosma32g00420.1 14 KGAWTKEEDEKLIAHILKHGDGCWRSLPKEAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP

2Myb_DNA-binding55.31.5e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T++Ed+l+++++  lG++ W++Ia +++ gRt++++k++w+++
  Zosma32g00420.1  67 RGNFTEDEDDLIIKLHSVLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.514961IPR017930Myb domain
SMARTSM007171.5E-131363IPR001005SANT/Myb domain
SuperFamilySSF466891.76E-2913108IPR009057Homeodomain-like
PfamPF002492.8E-151461IPR001005SANT/Myb domain
CDDcd001672.44E-111661No hitNo description
PROSITE profilePS5129428.01262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2765117IPR009057Homeodomain-like
SMARTSM007171.7E-1666114IPR001005SANT/Myb domain
PfamPF002496.8E-1667111IPR001005SANT/Myb domain
CDDcd001676.90E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDEKLIAHIL KHGDGCWRSL PKEAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEDEDDLIIK LHSVLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLIKRG  120
VDPFTHKPIQ NHVENEAKVE VSSVPVEQEK SSSESSSLLQ AQSPLPPLFN DQHRCPDLNL  180
DLNLGLSISP PTTTNLPILL EPQSAQQQPA IKMEFNGQCF YCKLGLSHVS GCKCNRSEVA  240
GMFLHYRSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028718.11e-98PREDICTED: myb-related protein 308
SwissprotP813936e-93MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A0K9P8A00.0A0A0K9P8A0_ZOSMR; Uncharacterized protein
STRINGXP_010028718.15e-98(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.19e-87myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]