PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma323g00050.1

Common Name

ZOSMA_323G00050

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

G2-like

Protein Properties

Length: 231aa MW: 26627.9 Da PI: 7.0681

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma323g00050.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101	7.9e-32	113	166	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+ave LGG+++AtPk++lelm+v++Ltl+hvkSHLQ+YR+ Zosma323g00050.1 113 PRMRWTTTLHAHFVHAVELLGGHDRATPKSVLELMNVNDLTLAHVKSHLQMYRT 166 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.35E-16	110	167	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.5E-28	112	166	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-23	113	166	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-7	114	165	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MQTHPHARDG RTHLIHPLLL LPNHRDMISP TSPDLALTIS PPAMMMMKTA TVTDDPDLRL 60 GLESSSPVVV PDEYNYIHHR FHYLHRHNNN NHRNNHHRTQ ICGREFKRSV RGPRMRWTTT 120 LHAHFVHAVE LLGGHDRATP KSVLELMNVN DLTLAHVKSH LQMYRTLKTS DNKASSAQPS 180 EGTIEEERER KRRMDNGSEN EDDDEDDDQG KEMMVPYVNL NLEFTLGRQY *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-15	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-15	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-15	114	168	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-15	114	168	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-15	114	168	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-15	114	168	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-15	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-15	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-15	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-15	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-15	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-15	114	168	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:19054366, ECO:0000269\|PubMed:20444210}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020705671.1	5e-42	probable transcription factor KAN4 isoform X1
Refseq	XP_020705672.1	5e-42	probable transcription factor KAN4 isoform X2
Swissprot	Q9FJV5	2e-41	KAN4_ARATH; Probable transcription factor KAN4
TrEMBL	A0A0K9P8R9	1e-170	A0A0K9P8R9_ZOSMR; Uncharacterized protein
STRING	XP_009364143.1	3e-40	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6554	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	4e-42	G2-like family protein

Link Out ? help Back to Top
Phytozome	Zosma323g00050.1

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS. Plant Physiol., 2016. 172(4): p. 2403-2415 [PMID:27794102]