PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma31g00990.1
Common NameZOSMA_31G00990
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 299aa    MW: 34425.5 Da    PI: 5.9361
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma31g00990.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.52.3e-52141411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeelv +yL++k++++ +++  +i+evd+yk++Pw+Lp ++  ++kewyfF++rd+ky++g+r+nra+++gyWkatg dk+v+ 
  Zosma31g00990.1  14 LPPGFRFHPTDEELVLHYLHRKIKQQYIPV-PIIAEVDLYKYDPWQLPDMALFGKKEWYFFTPRDRKYPNGSRPNRAAATGYWKATGADKPVTP 106
                      79****************************.88***************76667899*************************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +++  g+kk Lvfy+g+ap+g+kt+W+mheyrl
  Zosma31g00990.1 107 EgHTRPLGIKKALVFYTGKAPRGVKTNWIMHEYRL 141
                      867778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-629168IPR003441NAC domain
PROSITE profilePS5100560.41314168IPR003441NAC domain
PfamPF023654.3E-2815141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MARRSRDAEA ELNLPPGFRF HPTDEELVLH YLHRKIKQQY IPVPIIAEVD LYKYDPWQLP  60
DMALFGKKEW YFFTPRDRKY PNGSRPNRAA ATGYWKATGA DKPVTPEGHT RPLGIKKALV  120
FYTGKAPRGV KTNWIMHEYR LADTNRSANK KGSSLRLDDW VLCRLYNKKN NWEKETQMYQ  180
QQLQLQQQPK LEETENVSFG DSMDSSFEAV EETAFDSHSH RTPESDVDNG EYADNSTVVE  240
GGNRTTTIKE DTDQWFMDMN FDDLQNSFAT EGLDFSFLSG LLPSPIPKTP SQINLLNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-9331744174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020102207.11e-119NAC domain-containing protein 68-like
SwissprotQ52QH41e-109NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A0K9P9340.0A0A0K9P934_ZOSMR; NAC domain-containing protein 67
STRINGGSMUA_Achr5P07590_0011e-117(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53893761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-91NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]