PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma31g00910.1 | ||||||||
Common Name | ZOSMA_31G00910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NAC | ||||||||
Protein Properties | Length: 355aa MW: 40408.8 Da PI: 8.0157 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.2 | 3.1e-53 | 8 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+ +yLk+++ ++++++ ++i+evdiyk++PwdLp+k+k +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ Zosma31g00910.1 8 LPPGFRFHPTDEELILHYLKNRAMSESIQV-SIIAEVDIYKYDPWDLPAKAKFGDREWYFFSPRDRKYPNGVRPNRAAASGYWKATGTDKPIIT 100 79****************************.89***************99999****************************************9 PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + + e++g+kk Lvfy+g+ p+g ktdW+mheyrl Zosma31g00910.1 101 SsgGYETIGVKKALVFYSGKPPRGDKTDWIMHEYRL 136 9777788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-63 | 5 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.547 | 8 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-27 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MTNPESSLPP GFRFHPTDEE LILHYLKNRA MSESIQVSII AEVDIYKYDP WDLPAKAKFG 60 DREWYFFSPR DRKYPNGVRP NRAAASGYWK ATGTDKPIIT SSGGYETIGV KKALVFYSGK 120 PPRGDKTDWI MHEYRLSGSP NSSNKIHHHI HMKNKNTSSM RLDDWVLCRI YKKNNTQNTI 180 IQSCEKELRD CSNLEESYLS TLPNLAQQTS NNNFKIPKTS SLTESLEDNN YTMLNRFLFD 240 NPTDISTQQQ QQQMDCSFFN IPTNNFQNNS QAPATYSSSS NSLKRPRAED DYFETESSSG 300 VVAGSGDLHH PLRSFHNSSL NSSVNFSNQM MGLPQYNSNI YNHQLSLNSH LGLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-72 | 5 | 175 | 12 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010922870.1 | 1e-107 | NAC domain-containing protein 2 | ||||
Swissprot | Q8H4S4 | 9e-85 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
TrEMBL | A0A0K9P8W1 | 0.0 | A0A0K9P8W1_ZOSMR; NAC domain protein | ||||
STRING | XP_008782759.1 | 1e-103 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61110.1 | 9e-82 | NAC domain containing protein 25 |
Link Out ? help Back to Top | |
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Phytozome | Zosma31g00910.1 |
Publications ? help Back to Top | |||
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