PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma31g00900.1 | ||||||||
Common Name | ZOSMA_31G00900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NAC | ||||||||
Protein Properties | Length: 382aa MW: 43435.9 Da PI: 5.522 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.6 | 6e-54 | 19 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtd e+++eyLkkk +++ + ++i evd++k+ePwdLp+k+k +e+ewyf+ ++d+ky+tg r+nratk+gyWkatgkdk++++ Zosma31g00900.1 19 LPPGFRFHPTDLEVIDEYLKKKNLQRSYNP-RAIGEVDLNKCEPWDLPSKAKMGENEWYFYYQKDRKYPTGLRTNRATKAGYWKATGKDKPIYK 111 79*************************888.78***************99999***************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++l+g+kktLvfykgrapkgekt+Wvmhe+rl Zosma31g00900.1 112 GKRNLIGMKKTLVFYKGRAPKGEKTNWVMHEFRL 145 999*****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-59 | 17 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.398 | 19 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.1E-26 | 20 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MEGISEAMTP RDADFINELP PGFRFHPTDL EVIDEYLKKK NLQRSYNPRA IGEVDLNKCE 60 PWDLPSKAKM GENEWYFYYQ KDRKYPTGLR TNRATKAGYW KATGKDKPIY KGKRNLIGMK 120 KTLVFYKGRA PKGEKTNWVM HEFRLQSGNP TYTPNISQNQ KPEWVVCKIF HKNTDAIVNK 180 SDSLKTMMKT TSSAATFTSN PLPIGYNFDT SVIPQMVDIS HSYPTTNYIN NYIDAYNSGC 240 IDYSSTAAIN DIQNQQYYYP KTTSFAPYCD NLSFPNPQMT EIDISSPAQY VGTPIEIKPQ 300 PTPSISLTPM DKLMAVKQYM DKEEENVGDY YNNILPPVMS SPEMGIVDDG ESNEGLEVFL 360 NFIETKNEWP GSIYDSGAAY N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-47 | 11 | 175 | 7 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009403845.1 | 1e-80 | PREDICTED: NAC domain-containing protein 92-like | ||||
Refseq | XP_009403846.1 | 1e-80 | PREDICTED: NAC domain-containing protein 92-like | ||||
Swissprot | Q9FK44 | 4e-76 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A0K9PB71 | 0.0 | A0A0K9PB71_ZOSMR; NAC domain-containing protein 7 | ||||
STRING | GSMUA_Achr6P08600_001 | 6e-80 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 1e-79 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Zosma31g00900.1 |
Publications ? help Back to Top | |||
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