PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma31g00870.1 | ||||||||
Common Name | ZOSMA_31G00870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 312aa MW: 35204.1 Da PI: 8.8807 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 53 | 98 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l +v+q+G+ +W++Ia+++ gR++k+c++rw++ Zosma31g00870.1 53 RGHWRPAEDAKLRFLVAQHGPQNWNLIAEKVE-GRSGKSCRLRWFNQ 98 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 48.8 | 1.6e-15 | 105 | 148 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l+ a+ +G++ W++Iar ++ gRt++ +k++w+ Zosma31g00870.1 105 RRAFSEEEEERLLGAHGVYGSK-WALIARLFP-GRTDNAVKNHWHV 148 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.732 | 48 | 99 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-12 | 52 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-15 | 53 | 98 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.28E-27 | 53 | 146 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.5E-26 | 54 | 106 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.65E-11 | 56 | 97 | No hit | No description |
PROSITE profile | PS51294 | 24.109 | 100 | 154 | IPR017930 | Myb domain |
SMART | SM00717 | 6.7E-12 | 104 | 152 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-13 | 105 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.89E-9 | 107 | 147 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.2E-19 | 107 | 153 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 312 aa Download sequence Send to blast |
METNYMRRRR RNGCEMDFLA LTPPLSPFAR PTGPDDEQQS SEKENGLQKL CARGHWRPAE 60 DAKLRFLVAQ HGPQNWNLIA EKVEGRSGKS CRLRWFNQLD PKINRRAFSE EEEERLLGAH 120 GVYGSKWALI ARLFPGRTDN AVKNHWHVIM ARKHREQSNA YRRRKPCSPT YHPFSFNHNN 180 ACSAESTVTS TRDESTFHDS PSSSRFINRF GHNFISTTPS FRFPPPGPGP EQKVGALRSN 240 HSNGGWCLDE NIQESGGKKS CSFDADDVRD ESSTRLRMGG MTMVDVSGFS DSNYEASDLG 300 GFIDFMGVGR T* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 51 | 153 | 5 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021895363.1 | 7e-83 | transcription factor MYB56 | ||||
TrEMBL | A0A0K9P945 | 0.0 | A0A0K9P945_ZOSMR; Uncharacterized protein | ||||
STRING | evm.model.supercontig_73.4 | 9e-83 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69560.1 | 9e-68 | myb domain protein 105 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma31g00870.1 |