PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma31g00870.1
Common NameZOSMA_31G00870
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 312aa    MW: 35204.1 Da    PI: 8.8807
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma31g00870.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-155398147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed +l  +v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  Zosma31g00870.1 53 RGHWRPAEDAKLRFLVAQHGPQNWNLIAEKVE-GRSGKSCRLRWFNQ 98
                     899*****************************.***********996 PP

2Myb_DNA-binding48.81.6e-15105148146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++++eE+e+l+ a+  +G++ W++Iar ++ gRt++ +k++w+ 
  Zosma31g00870.1 105 RRAFSEEEEERLLGAHGVYGSK-WALIARLFP-GRTDNAVKNHWHV 148
                      678*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7324899IPR017930Myb domain
SMARTSM007174.4E-1252101IPR001005SANT/Myb domain
PfamPF002495.1E-155398IPR001005SANT/Myb domain
SuperFamilySSF466892.28E-2753146IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-2654106IPR009057Homeodomain-like
CDDcd001671.65E-115697No hitNo description
PROSITE profilePS5129424.109100154IPR017930Myb domain
SMARTSM007176.7E-12104152IPR001005SANT/Myb domain
PfamPF002497.1E-13105147IPR001005SANT/Myb domain
CDDcd001671.89E-9107147No hitNo description
Gene3DG3DSA:1.10.10.604.2E-19107153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
METNYMRRRR RNGCEMDFLA LTPPLSPFAR PTGPDDEQQS SEKENGLQKL CARGHWRPAE  60
DAKLRFLVAQ HGPQNWNLIA EKVEGRSGKS CRLRWFNQLD PKINRRAFSE EEEERLLGAH  120
GVYGSKWALI ARLFPGRTDN AVKNHWHVIM ARKHREQSNA YRRRKPCSPT YHPFSFNHNN  180
ACSAESTVTS TRDESTFHDS PSSSRFINRF GHNFISTTPS FRFPPPGPGP EQKVGALRSN  240
HSNGGWCLDE NIQESGGKKS CSFDADDVRD ESSTRLRMGG MTMVDVSGFS DSNYEASDLG  300
GFIDFMGVGR T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29511535107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021895363.17e-83transcription factor MYB56
TrEMBLA0A0K9P9450.0A0A0K9P945_ZOSMR; Uncharacterized protein
STRINGevm.model.supercontig_73.49e-83(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.19e-68myb domain protein 105