PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma313g00020.1

Common Name

ZOSMA_313G00020

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HB-other

Protein Properties

Length: 1585aa MW: 180434 Da PI: 6.0106

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma313g00020.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.6	3.8e-17	35	89	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t+ qle Le++F + + ps+e+r+eL++kl Lt+rq ++WF+ rR kekk Zosma313g00020.1 35 KRKMKTPFQLEHLEKAFVEASFPSEETRAELSMKLALTDRQLQMWFCHRRLKEKK 89 89999*************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-15	21	90	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.9E-16	23	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.58	30	90	IPR001356	Homeobox domain
SMART	SM00389	3.5E-13	32	94	IPR001356	Homeobox domain
CDD	cd00086	1.11E-12	35	91	No hit	No description
Pfam	PF00046	7.7E-15	35	89	IPR001356	Homeobox domain
PROSITE profile	PS50827	17.206	547	606	IPR018501	DDT domain
SMART	SM00571	1.5E-22	547	606	IPR018501	DDT domain
Pfam	PF02791	4.4E-19	548	603	IPR018501	DDT domain
Pfam	PF05066	7.2E-15	727	794	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.1E-6	929	971	IPR028942	WHIM1 domain
Pfam	PF15613	1.2E-11	1083	1154	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1585 aa Download sequence Send to blast
MEVSDEDGGG SDEKKTTPPY PTPAMVQPSN LQPAKRKMKT PFQLEHLEKA FVEASFPSEE 60 TRAELSMKLA LTDRQLQMWF CHRRLKEKKT NNMNAMIVPN SLPKRKASEN RYSHPPPRMM 120 DVKSPSPSKS PSPSQSPSSS PSHSPLLSHS SSSTPSPLAS PTSNNHKSAV SLESQTMLEH 180 AKIDSVMFML GNEFREDGPF LSTAFDSLPQ RAFGKFLERT EQQNLPEQQF HDENFLAINA 240 TNSYKAPSFV NSTENDYIPS SSSGKRKRKR KRRDHVLNVS CSQPRHGNHF PSEQLSIEAD 300 GNERLVPPHF YDKHTGGLSV HDDDQKNPCY NLNSQLAIKQ DSEHGVELEH KRVMWEEETR 360 LEKKRKIEDR RISKEISVHN KRLKKELEKQ ETLKRKRDEQ MRKEMERQDR EKKKEEDKLL 420 REKQREEERH QRELKRVHER REKVLQKENL RAEKIRIKEK IKKEKEAARI KAANERAAAR 480 KYMDLIEDER LELMNIAASS KGLTSITCLD DVTLQNLNTF QEMLKEFPPQ SVYLKQPFSV 540 RPWIDSNECI GNLLMVWNFL INFADVLSLW PFTLDEFVQA LHDYDSRLLS EIHISLLKFI 600 IKDIEDVVSS ISPGGNHNSA ANPGIGHSQV VVKEAYAWGF DIKIWENHLN HLTWPEILRQ 660 FALCAGFGPQ LRKYDETASH RNEDECHDSE DVISALRSGM AAENALSTMQ GKGSSHLRRK 720 RHILTPGTVK FAAFHVLSLE GSNGLTILEI ADKIQKSGLR DLTTSKTPEA SISAALSRDT 780 ELFARTAPST YCVQAAYRKD PSDADSILAT AREKMHMFES RYLEMEISEK DTEGIGGAER 840 DDPEIEGINP KIKFPDVQNQ CELNSVIKSN HTGNENDVSF DGVAIDSDSS AKIIDKASNL 900 DASNDHFHES TFEKGAKVDG SEIDESNPGE SWIQGLMDGE YSDISVEERL NALVSLVGVV 960 LEGNTIHVIL EERMKAVKIL KQQMLAEFQL DKKRMKENLC RLELSSLGKN SEMLQDNIAN 1020 MKSNDLKNPH NLKSIDTKRT MIGQGLKTNP NVSQLQHCRY FEKSLSQIKS YISRKAEQVH 1080 PYRSLPLGQD RRHNQYWQFI ASASKSDPGS GRIFFESRDG YWQLIDSEEA FDSLLAALDL 1140 RGIRESNLHS ELLNIESSFK ETVKMNKSFN PNCGLGLSSP DSAVSGLTVD PSDRSSSFYI 1200 ELGQNQMEQT CLMKRYQDFQ RWMWKNCFNS AVLCAIKIGR RRCPEMLEIC NFCFNTYFSE 1260 DKHCSSCHTT FKNRYNFEVI FSEHVACCEQ RVDSGCTLDC SKSSLPIRFQ MLKMQLSRIE 1320 ASIPTEALLP FWTDFYRKSW SVKLQLSSSA EDLFQILTIL ESAIKRDCLS PNFDTTNELL 1380 GNSLPVNSMD KVEFDSLVVK VLPWIPHTTA AVVLRLMELD GSIFYDLDLK HNSLKEGYSD 1440 KLIELPSSNS VVNGIVDSEH METVGHDDDH FSECDRTDPQ AKHTATRVLS SRGRGVRKRG 1500 HDGKSILKEE KTKELNGMES VDNDEVYGDE YDDEYYGRKH VLADSESQED SVGDDEADMD 1560 YRNEVMMNDD DIDNESYASS DDSD*

Sequence ? help Back to Top

Protein Sequence Length: 1585 aa Download sequence Send to blast

MEVSDEDGGG SDEKKTTPPY PTPAMVQPSN LQPAKRKMKT PFQLEHLEKA FVEASFPSEE  60
TRAELSMKLA LTDRQLQMWF CHRRLKEKKT NNMNAMIVPN SLPKRKASEN RYSHPPPRMM  120
DVKSPSPSKS PSPSQSPSSS PSHSPLLSHS SSSTPSPLAS PTSNNHKSAV SLESQTMLEH  180
AKIDSVMFML GNEFREDGPF LSTAFDSLPQ RAFGKFLERT EQQNLPEQQF HDENFLAINA  240
TNSYKAPSFV NSTENDYIPS SSSGKRKRKR KRRDHVLNVS CSQPRHGNHF PSEQLSIEAD  300
GNERLVPPHF YDKHTGGLSV HDDDQKNPCY NLNSQLAIKQ DSEHGVELEH KRVMWEEETR  360
LEKKRKIEDR RISKEISVHN KRLKKELEKQ ETLKRKRDEQ MRKEMERQDR EKKKEEDKLL  420
REKQREEERH QRELKRVHER REKVLQKENL RAEKIRIKEK IKKEKEAARI KAANERAAAR  480
KYMDLIEDER LELMNIAASS KGLTSITCLD DVTLQNLNTF QEMLKEFPPQ SVYLKQPFSV  540
RPWIDSNECI GNLLMVWNFL INFADVLSLW PFTLDEFVQA LHDYDSRLLS EIHISLLKFI  600
IKDIEDVVSS ISPGGNHNSA ANPGIGHSQV VVKEAYAWGF DIKIWENHLN HLTWPEILRQ  660
FALCAGFGPQ LRKYDETASH RNEDECHDSE DVISALRSGM AAENALSTMQ GKGSSHLRRK  720
RHILTPGTVK FAAFHVLSLE GSNGLTILEI ADKIQKSGLR DLTTSKTPEA SISAALSRDT  780
ELFARTAPST YCVQAAYRKD PSDADSILAT AREKMHMFES RYLEMEISEK DTEGIGGAER  840
DDPEIEGINP KIKFPDVQNQ CELNSVIKSN HTGNENDVSF DGVAIDSDSS AKIIDKASNL  900
DASNDHFHES TFEKGAKVDG SEIDESNPGE SWIQGLMDGE YSDISVEERL NALVSLVGVV  960
LEGNTIHVIL EERMKAVKIL KQQMLAEFQL DKKRMKENLC RLELSSLGKN SEMLQDNIAN  1020
MKSNDLKNPH NLKSIDTKRT MIGQGLKTNP NVSQLQHCRY FEKSLSQIKS YISRKAEQVH  1080
PYRSLPLGQD RRHNQYWQFI ASASKSDPGS GRIFFESRDG YWQLIDSEEA FDSLLAALDL  1140
RGIRESNLHS ELLNIESSFK ETVKMNKSFN PNCGLGLSSP DSAVSGLTVD PSDRSSSFYI  1200
ELGQNQMEQT CLMKRYQDFQ RWMWKNCFNS AVLCAIKIGR RRCPEMLEIC NFCFNTYFSE  1260
DKHCSSCHTT FKNRYNFEVI FSEHVACCEQ RVDSGCTLDC SKSSLPIRFQ MLKMQLSRIE  1320
ASIPTEALLP FWTDFYRKSW SVKLQLSSSA EDLFQILTIL ESAIKRDCLS PNFDTTNELL  1380
GNSLPVNSMD KVEFDSLVVK VLPWIPHTTA AVVLRLMELD GSIFYDLDLK HNSLKEGYSD  1440
KLIELPSSNS VVNGIVDSEH METVGHDDDH FSECDRTDPQ AKHTATRVLS SRGRGVRKRG  1500
HDGKSILKEE KTKELNGMES VDNDEVYGDE YDDEYYGRKH VLADSESQED SVGDDEADMD  1560
YRNEVMMNDD DIDNESYASS DDSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	272	KRKRKRKRR
2	265	273	RKRKRKRRD
3	266	272	KRKRKRR
4	267	272	RKRKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008811888.1	0.0	homeobox-DDT domain protein RLT2-like isoform X2
TrEMBL	A0A0K9PBP4	0.0	A0A0K9PBP4_ZOSMR; Putative Homeobox protein
STRING	XP_008811887.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Zosma313g00020.1