PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma312g00060.1
Common NameZOSMA_312G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family AP2
Protein Properties Length: 329aa    MW: 37126.1 Da    PI: 6.9528
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma312g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.6e-1245100255
               AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        ++GV+ ++++gr++A+++d  ++n+ ++k+ + g ++ +e Aa a++ a++k++g
  Zosma312g00060.1  45 IHRGVTKHRWTGRYEAHLWDkNCWNQsQNKKGRQGAYDEEEAAAHAYDLAALKYWG 100
                       68******************99999998988888********************98 PP
2AP250.35.8e-16143194155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I  +     +k+ +lg+f t eeAa a++ a+ +++g
  Zosma312g00060.1 143 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFATQEEAATAYDMAAIEYRG 194
                       89****99**********988422...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-1444110IPR016177DNA-binding domain
SMARTSM003803.0E-2045114IPR001471AP2/ERF domain
PROSITE profilePS5103218.16245108IPR001471AP2/ERF domain
PfamPF008475.2E-845100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-1146108IPR001471AP2/ERF domain
PRINTSPR003672.5E-54657IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18143204IPR016177DNA-binding domain
CDDcd000186.53E-24143204No hitNo description
PfamPF008472.1E-11143194IPR001471AP2/ERF domain
SMARTSM003803.0E-26144208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-18144203IPR001471AP2/ERF domain
PROSITE profilePS5103218.321144202IPR001471AP2/ERF domain
PRINTSPR003672.5E-5184204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MTGKEAPSDS SGKSRSSSNG VTVNVKVKRT RKSVSRRSPS QRSSIHRGVT KHRWTGRYEA  60
HLWDKNCWNQ SQNKKGRQGA YDEEEAAAHA YDLAALKYWG QDTVLNFPVN LYGDEMKEME  120
GQTREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVLGNKYL YLGTFATQEE  180
AATAYDMAAI EYRGLNAVTN FDLSRYMNWL HPVDQNLPDP ILNQVADNVA REVGINFHHC  240
HEMMKSDATA TAAVISTNIT DDKTVSAPSN DTTVVLDQVP STGCSFPVDI QTNFEYCNEY  300
LNFTDGDDIL FQDFSSYCPT IFHYELDF*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632327.11e-133AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN42e-97AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0K9P9E70.0A0A0K9P9E7_ZOSMR; AP2-like ethylene-responsive transcription factor
STRINGcassava4.1_025233m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.22e-85AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]