PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma310g00160.1
Common NameZOSMA_310G00160
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 285aa    MW: 31794.5 Da    PI: 4.8484
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma310g00160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.5e-1994143255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +++G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a++  +++++g
  Zosma310g00160.1  94 QFRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEEAARAYDVEARRIRG 143
                       69*******.**********94....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.5E-3294152IPR001471AP2/ERF domain
CDDcd000186.86E-3494153No hitNo description
SMARTSM003802.0E-3694157IPR001471AP2/ERF domain
PROSITE profilePS5103223.61794151IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-2294153IPR016177DNA-binding domain
PRINTSPR003672.3E-1195106IPR001471AP2/ERF domain
PfamPF008472.0E-1195143IPR001471AP2/ERF domain
PRINTSPR003672.3E-11117133IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MCGGAIISGF IPEGVATSRI DEFDKECEEF EADFMKFNDD DDEQEEVEFV EDKHFGVSSR  60
PLISSQKIPT QVKLSSESKR AVDETPSTKK RKNQFRGIRQ RPWGKWAAEI RDPQKGVRVW  120
LGTFNTAEEA ARAYDVEARR IRGAKAKVNF PDNFPVHDVP KATPSKISRR KPNLSANISP  180
VTMAKHFSAV ESDQSSNSFG SSGFGLECES KTSEITSPVK KLKNNSGEAV GTEALSEDFM  240
TYMKFFQMPI SSPLGSVEKS VDDDLILDSN LWLFDDDFTS NNMY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2294151260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009391708.12e-57PREDICTED: ethylene-responsive transcription factor 1-like
RefseqXP_018679416.12e-57PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLA0A0K9P9S50.0A0A0K9P9S5_ZOSMR; Ethylene-responsive transcription factor RAP2-2
STRINGXP_008797374.14e-54(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.38e-37ERF family protein