PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma310g00040.1 | ||||||||
Common Name | ZOSMA_310G00040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 205aa MW: 22472.7 Da PI: 4.7787 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.5 | 6.9e-31 | 2 | 101 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C ++C+l+p++ p++q +++ +v+k+FG++ ++k+++++pe+er+++++sl++eA+ r +Pv+Gavg+++++++ ++ Zosma310g00040.1 2 SCNGCRVLRKGCGEKCILRPCLqwienPDAQGHATVFVAKFFGRAGLMKFISSVPETERPAIFQSLLFEACGRSVNPVNGAVGLLWSGKWSIC 94 6**************************9***************************************************************** PP DUF260 89 qlkaela 95 q+++e+ Zosma310g00040.1 95 QSAVETI 101 **99875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.136 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-25 | 2 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence Send to blast |
MSCNGCRVLR KGCGEKCILR PCLQWIENPD AQGHATVFVA KFFGRAGLMK FISSVPETER 60 PAIFQSLLFE ACGRSVNPVN GAVGLLWSGK WSICQSAVET ILRGGTLQPL TDLHDEMSDA 120 AEIYSQKRVN RNRMSTVDDA VEKTWMVDAF DLDLCLSPTP AYMSAYTRHR GVCLEEEEGE 180 EEGSVTTSSG SGEIVQPMLL NLFI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010939132.1 | 3e-78 | LOB domain-containing protein 38 | ||||
Swissprot | Q9SZE8 | 9e-68 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A0K9P9R6 | 1e-150 | A0A0K9P9R6_ZOSMR; LOB domain-containing protein 39 | ||||
STRING | XP_008800648.1 | 2e-77 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37540.1 | 8e-70 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma310g00040.1 |