PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma30g01030.1 | ||||||||
Common Name | ZOSMA_30G01030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NAC | ||||||||
Protein Properties | Length: 334aa MW: 37242.1 Da PI: 8.1685 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166 | 1.3e-51 | 14 | 142 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhP+deel++eyL+kk++g+ ++ ++++vd++kvePw+Lp+++ + kewyf+s rdkkyatg+r+nrat sgyWkatgkd+++ + Zosma30g01030.1 14 LPPGFRFHPRDEELINEYLAKKLSGEFDSC-PMMEDVDLNKVEPWELPATACVGGKEWYFYSLRDKKYATGQRTNRATLSGYWKATGKDRHISD 106 79***********************99777.78***************7777799*************************************99 PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g lvg++ktLvfy+grapkg+kt+Wvmhe+r+ Zosma30g01030.1 107 GrrGGILVGMRKTLVFYQGRAPKGKKTHWVMHEFRM 142 7667788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-55 | 5 | 152 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.399 | 14 | 201 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-25 | 15 | 142 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.48E-55 | 189 | 201 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MAATSFLTMT EAKLPPGFRF HPRDEELINE YLAKKLSGEF DSCPMMEDVD LNKVEPWELP 60 ATACVGGKEW YFYSLRDKKY ATGQRTNRAT LSGYWKATGK DRHISDGRRG GILVGMRKTL 120 VFYQGRAPKG KKTHWVMHEF RMETAPAPAI DDHHHFLHHH PHLHLPKPAP PPTPQLPSSS 180 SPPPSSYSVK EDWVLCRVFY KSRGLSPKQG NITTAMENCT YMAVDDAGSS SLPPLMETYM 240 HFDHPQNHTN TADINNNVVS VHPGGYNINE PKVPCFSNLR FHTTQLPPLI ENANNNLPAA 300 SSTSTSQIGR TTATRLPDIT SFLGPLVNYG CEN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-45 | 9 | 142 | 12 | 142 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-45 | 9 | 142 | 12 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-45 | 9 | 142 | 12 | 142 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-45 | 9 | 142 | 12 | 142 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-45 | 9 | 142 | 15 | 145 | NAC domain-containing protein 19 |
3swm_B | 7e-45 | 9 | 142 | 15 | 145 | NAC domain-containing protein 19 |
3swm_C | 7e-45 | 9 | 142 | 15 | 145 | NAC domain-containing protein 19 |
3swm_D | 7e-45 | 9 | 142 | 15 | 145 | NAC domain-containing protein 19 |
3swp_A | 7e-45 | 9 | 142 | 15 | 145 | NAC domain-containing protein 19 |
3swp_B | 7e-45 | 9 | 142 | 15 | 145 | NAC domain-containing protein 19 |
3swp_C | 7e-45 | 9 | 142 | 15 | 145 | NAC domain-containing protein 19 |
3swp_D | 7e-45 | 9 | 142 | 15 | 145 | NAC domain-containing protein 19 |
4dul_A | 8e-45 | 9 | 142 | 12 | 142 | NAC domain-containing protein 19 |
4dul_B | 8e-45 | 9 | 142 | 12 | 142 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010941568.1 | 2e-93 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 9e-74 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A0K9P9R8 | 0.0 | A0A0K9P9R8_ZOSMR; NAC domain-containing protein 21/22 | ||||
STRING | XP_008778535.1 | 2e-89 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-73 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Zosma30g01030.1 |