PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma30g00280.1
Common NameZOSMA_30G00280
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family SBP
Protein Properties Length: 362aa    MW: 40469.5 Da    PI: 6.6353
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma30g00280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP712.3e-2287136150
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 
                      +CqvegC++ l++akey+++hkvC vhsk+p v+v g+eqrfCqqCsrf 
  Zosma30g00280.1  87 RCQVEGCNVSLKDAKEYYKKHKVCGVHSKSPRVIVLGVEQRFCQQCSRFV 136
                      6************************************************5 PP
2SBP41.63.3e-131541794974
                      EEETTT--SS--S-STTTT------- CS
              SBP  49 fhelsefDeekrsCrrrLakhnerrr 74 
                      fh++sefDe+krsCrrrLa+hnerr+
  Zosma30g00280.1 154 FHAVSEFDETKRSCRRRLAGHNERRK 179
                      9************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-2584168IPR004333Transcription factor, SBP-box
PROSITE profilePS5114125.23985181IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.41E-2986181IPR004333Transcription factor, SBP-box
PfamPF031102.0E-1788135IPR004333Transcription factor, SBP-box
PfamPF031102.1E-7154179IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MDEKASKLGN GLSWDIWAVD GNWRTNPPPP PSSTSAPTTD QAHQNMTCLK LGKRQYQEEG  60
RLGVKKDKVL MVGGGSSSSS TLAPVARCQV EGCNVSLKDA KEYYKKHKVC GVHSKSPRVI  120
VLGVEQRFCQ QCSRFVVREI DICMPSHQPP LMLFHAVSEF DETKRSCRRR LAGHNERRKI  180
SGEAIMRSRS LDNTTMRSRY CYLPSPSPSL SPTSTSSGHV LSLLSGADFP WVSPVDGSNT  240
SYQSSVALRE LIAENRAVHL AQKLYMEEQQ SLRSVSTPFI IPNIDNNTHR DWDSSWCNHL  300
CDAAATNPHI TLDLMQIACP SFEFLSKKNE SGEEPNEDEE EEEDQDQCSE IWKSLEEKHL  360
V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-2575179183squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PBY10.0A0A0K9PBY1_ZOSMR; Putative Squamosa promoter-binding protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103033439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.16e-31squamosa promoter binding protein-like 9