PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma30g00140.1 | ||||||||
Common Name | ZOSMA_30G00140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | TALE | ||||||||
Protein Properties | Length: 300aa MW: 34051.4 Da PI: 6.6791 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.2 | 1.2e-07 | 248 | 281 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + Zosma30g00140.1 248 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 281 469*****************************87 PP | |||||||
2 | ELK | 26.3 | 1.7e-09 | 202 | 223 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ Zosma30g00140.1 202 ELKIELKQGFRSRIEDVREEIL 223 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 6.0E-17 | 37 | 81 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.1E-15 | 39 | 80 | IPR005540 | KNOX1 |
SMART | SM01256 | 2.1E-15 | 92 | 147 | IPR005541 | KNOX2 |
Pfam | PF03791 | 3.1E-13 | 97 | 146 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.184 | 202 | 222 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.758 | 222 | 285 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.02E-16 | 224 | 289 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.1E-11 | 224 | 289 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.01E-11 | 225 | 286 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-25 | 229 | 287 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 242 | 281 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MMMPPGGGGS GGGGSGGGED HHRKHELLQQ QEYEIMKLLK SEIAVHPLCE QLLSAHIGCL 60 RVATPIDHLP LIDAQLAQSQ HLLRSYASNH RNILSSQDKH ELHNVLGQYV LVLCSFKEQL 120 QNHVRVHAVE AVSACREIEQ SLHDLTGVTL EEGTGTTMSE DEEEIQMDYG NDESGDVNDM 180 MGFGPLLPTE SERTLMDRVR QELKIELKQG FRSRIEDVRE EILRKRRAGK LPGDTTSVLK 240 QWWQQHSKWP YPTEDDKAKL VEETGLQLKQ INNWFINQRK RNWHNNSNSV TSLKSKRKR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 278 | 298 | RKRNWHNNSNSVTSLKSKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010933995.1 | 1e-162 | homeobox protein knotted-1-like 3 | ||||
Swissprot | Q94LW3 | 1e-153 | KNOS3_ORYSJ; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A0K9P9I1 | 0.0 | A0A0K9P9I1_ZOSMR; Homeobox protein knotted-1-like 3 | ||||
STRING | XP_008807225.1 | 1e-157 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP564 | 38 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-143 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | Zosma30g00140.1 |