PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma30g00060.1
Common NameZOSMA_30G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 416aa    MW: 45079 Da    PI: 5.6462
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma30g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.4e-32218273156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Zosma30g00060.1 218 KARRCWSPDLHRRFVNALQVLGGSQVATPKQIRELMKVEGLTNDEVKSHLQKYRLH 273
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.67E-16215275IPR009057Homeodomain-like
PROSITE profilePS5129412.201215275IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-28216275IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-26218273IPR006447Myb domain, plants
PfamPF002493.6E-6220271IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGSNELSLDY KPNVDITLST TSEADQPDPT HKLKQFLARL EQERLKIDVF KKELPLCMQL  60
LNNAMEVYRQ QLEEGGEKMA VTEEFLPAVV KKNCTGDDKS DNSEPLEKAN WLASVQLWTQ  120
SNNEVPSSPK RWNTGGAFLP FSKEKTVDKA SGCSDLALAP VEDNRPSVLE TIEESRDDRC  180
DNNISTTPNM ENSGGGGGGG QTAAGMGSSG GQNQTHRKAR RCWSPDLHRR FVNALQVLGG  240
SQVATPKQIR ELMKVEGLTN DEVKSHLQKY RLHTRPLPAP AQHAVASGHP KLVVLGGIWV  300
PPEYATSATV YSTHPSSATQ FCTTAATPLS RGFYSSPTAP QPPQASNAHS HCSVTRHRCG  360
LQGTVELDKK GNREETSEST EEEIKEEVEA ERKSGTSCSN GAGGGEEDSN GSDMC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-14218271154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-14218271154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-14218271154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-14218271154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792133.16e-96transcription factor NIGTH1
SwissprotQ9ZQ855e-80EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A0K9PC030.0A0A0K9PC03_ZOSMR; Myb family transcription factor
STRINGXP_008792133.12e-95(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP97733338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.18e-81G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]