PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma2g01900.1
Common NameZOSMA_2G01900
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 351aa    MW: 40495.7 Da    PI: 5.9645
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma2g01900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-15104151148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W++eEde+l +++ ++G g+W++ +++  + R++k+c++rw++yl
   Zosma2g01900.1 104 KGLWSPEEDEKLFNYIIRYGIGRWSSLPQKADLQRCGKSCRLRWLNYL 151
                      678*******************************************97 PP
2Myb_DNA-binding46.67.7e-15157201147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++ E++l++ +++ lG++ W+ Ia +++ gRt++++k++w++ 
   Zosma2g01900.1 157 RGSFSQKEEDLIITLHRNLGNR-WSQIAGKLP-GRTDNEIKNFWNSN 201
                      899*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.78399151IPR017930Myb domain
SuperFamilySSF466892.07E-27102198IPR009057Homeodomain-like
SMARTSM007171.1E-10103153IPR001005SANT/Myb domain
PfamPF002491.1E-12104151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-22105158IPR009057Homeodomain-like
CDDcd001679.48E-10107151No hitNo description
PROSITE profilePS5129423.976152206IPR017930Myb domain
SMARTSM007172.2E-14156204IPR001005SANT/Myb domain
PfamPF002491.8E-13157201IPR001005SANT/Myb domain
CDDcd001671.64E-9159202No hitNo description
Gene3DG3DSA:1.10.10.603.4E-25159207IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSVMFETDRS PALLPLKSIN VGKRALEEEE KEEEEDITTP RAGDVKIPEK LPCPPAPKKK  60
KSIPSKYRRQ DMDFFIPPEL ETVFLRRSPP LHDAMNCGRK EMRKGLWSPE EDEKLFNYII  120
RYGIGRWSSL PQKADLQRCG KSCRLRWLNY LRPDVKRGSF SQKEEDLIIT LHRNLGNRWS  180
QIAGKLPGRT DNEIKNFWNS NLKKKLKNQA GIDPNTHRSV STETQLEPLQ EYMFSSIASS  240
GPITVPVFDL SSPHLDCKNF ISEPIQTIEN SATALPNSNI VLDVWNSFYT EYYSNDSERN  300
YHENSWIDFL QHDMEDTLMD PHAVSFPPGF DCRIDEDGFD TITSSWTFQK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-2810120624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PB370.0A0A0K9PB37_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-62myb domain protein 86