PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma2g01850.1

Common Name

ZOSMA_2G01850

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

ZF-HD

Protein Properties

Length: 359aa MW: 38751.4 Da PI: 7.6223

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma2g01850.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	90.6	1.5e-28	102	154	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eCl+NhAas+Ggh+vDGCgEfmp e +++ lkC+ CgCHR+FHR+e + Zosma2g01850.1 102 STRYRECLRNHAASVGGHVVDGCGEFMPG--E--EMDFLKCSVCGCHRSFHRKEIDG 154 579***********************8..3..478**************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.6E-24	103	152	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	7.1E-25	104	152	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-15	104	151	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.431	105	151	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.84E-16	263	323	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.0E-27	265	323	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	7.9E-26	266	322	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MEETRQPSVG FTGVNDNQFN TTQPISSVLT STSNTTTVAA AAVTLLAPRY GVNGSSDVGG 60 KDTVKVLSDP VVRSIGATSA GMDTSLAAAR ISEVPIKNEV DSTRYRECLR NHAASVGGHV 120 VDGCGEFMPG EEMDFLKCSV CGCHRSFHRK EIDGSIAGTI TPRPYYYKHH AANGGDGVHW 180 RINEGPSSLP LLALPPPQAG SRPPYNPIPV TSFPGCSAGA TAMDSSSEEH DAHPPHLTAA 240 NWNREGLKHH GQGFMPIPPP ACLFSRKRHR TKFTSDQKEK MLEFAESLGW RINQEEEIAL 300 QRFCAEIGLS RKVFKVWMHN NKHVSSTSAS SRRSPLPPPP STEKQQQSEV DPSPSTTL*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MEETRQPSVG FTGVNDNQFN TTQPISSVLT STSNTTTVAA AAVTLLAPRY GVNGSSDVGG  60
KDTVKVLSDP VVRSIGATSA GMDTSLAAAR ISEVPIKNEV DSTRYRECLR NHAASVGGHV  120
VDGCGEFMPG EEMDFLKCSV CGCHRSFHRK EIDGSIAGTI TPRPYYYKHH AANGGDGVHW  180
RINEGPSSLP LLALPPPQAG SRPPYNPIPV TSFPGCSAGA TAMDSSSEEH DAHPPHLTAA  240
NWNREGLKHH GQGFMPIPPP ACLFSRKRHR TKFTSDQKEK MLEFAESLGW RINQEEEIAL  300
QRFCAEIGLS RKVFKVWMHN NKHVSSTSAS SRRSPLPPPP STEKQQQSEV DPSPSTTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	4e-22	266	329	17	80	ZF-HD homeobox family protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PB35	0.0	A0A0K9PB35_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP815	35	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	7e-43	homeobox protein 31

Link Out ? help Back to Top
Phytozome	Zosma2g01850.1