PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma2g01340.1
Common NameZOSMA_2G01340
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family SBP
Protein Properties Length: 401aa    MW: 44249.2 Da    PI: 7.132
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma2g01340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.41.5e-41129205278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     C v+gC++dls++++yhrrhkvCe+hsk+pvvl+ g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+
  Zosma2g01340.1 129 CLVDGCKSDLSNCRDYHRRHKVCETHSKTPVVLIGGQEQRFCQQCSRFHLLIEFDEIKRSCRKRLDGHNRRRRKPQP 205
                     **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-33122190IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.77126203IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.92E-39127208IPR004333Transcription factor, SBP-box
PfamPF031101.2E-30129202IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MCVEDLFISV NKSYSLFQFQ LLPFCRGESE LSSLLSSIPF FFPSFLLPFL SALVSMDWDL  60
PEFEPNIGSG SSPSMDVDLN LGTCLGGDFR SSSIWKPQQP QQQQQSSSSG AGQPKRHRQP  120
TNGSHNVACL VDGCKSDLSN CRDYHRRHKV CETHSKTPVV LIGGQEQRFC QQCSRFHLLI  180
EFDEIKRSCR KRLDGHNRRR RKPQPDPFSG NLHINPQASG FTLYSSHNIF STTTVAAEAV  240
GERGLQSYYG CQPLLNTISF TGNSSRNRND KMILDGLTEA LDCDCALSLL SPPPPQHQQP  300
SPSTQTLNLS HQHHSHSHMI LPHSGTDHTF PQQYGSGFNR YSSRSQSSPD ASTTGEFSCS  360
GIIDDPRSNV LDLQSSSIFG GSTSPHGDGG HSILLPYSWP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-261292021184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185202KRSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008806431.17e-69squamosa promoter-binding-like protein 16
RefseqXP_010926841.15e-69squamosa promoter-binding-like protein 16
TrEMBLA0A0K9PD240.0A0A0K9PD24_ZOSMR; Uncharacterized protein
STRINGXP_008806431.13e-68(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.13e-43SBP family protein