PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma29g01520.1

Common Name

ZOSMA_29G01520

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

G2-like

Protein Properties

Length: 284aa MW: 31367.2 Da PI: 10.1876

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma29g01520.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.1	3.1e-31	141	194	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv++v+ LGG+e+AtPk++lelm+vk Ltl+hvkSHLQ+YR+ Zosma29g01520.1 141 PRMRWTTTLHARFVHVVQLLGGHERATPKSVLELMDVKELTLAHVKSHLQMYRT 194 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.67E-14	139	194	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-27	140	194	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.8E-23	141	194	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-7	142	193	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MIGNRIGIAY DMELFPPHPD LSLQISPPNH SQEMGFCRSS GTNMDLSLAP GHECHDQTII 60 HKQDVWHSDV TMLKPIRGIP VYRHPPTFFP FLHQNQASTH RHILARSSNN ISSSSSSSSS 120 GGGTGPRFFS RFPARRSMGT PRMRWTTTLH ARFVHVVQLL GGHERATPKS VLELMDVKEL 180 TLAHVKSHLQ MYRTVKTTDK PSHPPAAAAP APSDPEKSPR ARAGDNISDD SLQGSESSTQ 240 NPDHFSRSIS WLNSSSPTSR SRSMSIPSDV KPNLEFTLGR PHY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	139	196	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	139	196	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	139	196	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	139	196	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	139	196	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	139	196	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	139	196	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	139	196	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026663270.1	3e-63	probable transcription factor KAN2
Swissprot	Q9C616	4e-43	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A0K9PBZ2	0.0	A0A0K9PBZ2_ZOSMR; Myb family transcription factor-like protein
STRING	XP_008800121.1	1e-62	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4721	36	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17695.1	1e-34	G2-like family protein

Link Out ? help Back to Top
Phytozome	Zosma29g01520.1

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]