PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma29g01030.1 | ||||||||
Common Name | ZOSMA_29G01030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 690aa MW: 77493.8 Da PI: 7.0435 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 43.1 | 7e-14 | 27 | 82 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +rk +++++ ++ L + F++ ++p++e++ ++ +k +++ ++Vk+WFqNrR+++k Zosma29g01030.1 27 KRKYCRHSPHTIQNLLAIFKEFPNPNEEQISDIGTKFNIEFQKVKFWFQNRRTQMK 82 789999***********************************************998 PP | |||||||
2 | START | 123.1 | 3.5e-39 | 187 | 420 | 2 | 206 |
HHHHHHHHHHHHHHHC-.TT-EEEE.....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 2 laeeaaqelvkkalaee.pgWvkss.....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....k 78 +a +a++elvk+a++++ + W+ e++n+++ l f++ + + +e ras++ +++ ve+l+d+ +W +++ k Zosma29g01030.1 187 IAVKAMDELVKLAKSSStDIWTANDtdfihEKLNYEKFLHAFPSCIGpkpqhigFVSEGTRASAIIMANSNVIVETLMDVD-RWVSMFPcsisK 279 78899********9765278*99989999*************9988899*999999999************9*********.************ PP EEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCE CS START 79 aetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksngh 161 a+t++v+s+ +alqlm+aelq+lsplvp R++ f+R+++ +g+w++vd+S+d+ ++ + +s+ + ++pSg++ie+ sng Zosma29g01030.1 280 ASTINVLSNIgvsgtkdNALQLMKAELQVLSPLVPiREVIFLRFCKMIAEGVWAVVDTSIDESTYGTIysiPKSSTGCWKFPSGCVIEDFSNGQ 373 ********988999999**************************************************99998999999**************** PP ..EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 162 ..skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kv+wveh+ ++++ +h++ sl++sg+ ga++w++tl+rqce+ Zosma29g01030.1 374 skAKVIWVEHIMYNEYGIHEVHDSLMRSGAGLGANKWLSTLKRQCET 420 7779*****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.33E-11 | 15 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.422 | 24 | 84 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-11 | 24 | 90 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.0E-9 | 26 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.32E-10 | 27 | 84 | No hit | No description |
Pfam | PF00046 | 1.9E-11 | 27 | 82 | IPR001356 | Homeobox domain |
PROSITE profile | PS50848 | 32.812 | 177 | 423 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.48E-23 | 182 | 421 | No hit | No description |
CDD | cd08875 | 2.47E-77 | 185 | 419 | No hit | No description |
SMART | SM00234 | 1.6E-25 | 186 | 420 | IPR002913 | START domain |
Pfam | PF01852 | 2.6E-32 | 187 | 420 | IPR002913 | START domain |
SuperFamily | SSF55961 | 5.86E-8 | 459 | 617 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 690 aa Download sequence Send to blast |
MLNPRENVAD DESNRENPPS MISNYRKRKY CRHSPHTIQN LLAIFKEFPN PNEEQISDIG 60 TKFNIEFQKV KFWFQNRRTQ MKIQLEKQEN NAMIRENDKL LVDNNNLRMS IITRDPTFCR 120 FCGNQCMIEE FSLDEQHLRR ENAYLEEEID RAYSIAGRSL VDHQIFISSS VNGELKNERL 180 RTLYIQIAVK AMDELVKLAK SSSTDIWTAN DTDFIHEKLN YEKFLHAFPS CIGPKPQHIG 240 FVSEGTRASA IIMANSNVIV ETLMDVDRWV SMFPCSISKA STINVLSNIG VSGTKDNALQ 300 LMKAELQVLS PLVPIREVIF LRFCKMIAEG VWAVVDTSID ESTYGTIYSI PKSSTGCWKF 360 PSGCVIEDFS NGQSKAKVIW VEHIMYNEYG IHEVHDSLMR SGAGLGANKW LSTLKRQCET 420 LAFLMSTSSS PDIGIMGHRS LLKLVHRMTN SFYKGVCPSV NTWTMLSSSS SSSRDTSSNI 480 KLMMRKIFNS PGEPIGVVLN GATSLWLPVS HACLMKYLQD VSVRNEWDIL INGGPMHVTN 540 LVPKGWNSSN HISIIRPTVC VDDGRSNMVI VQETSTDESG SLMVYASMDN KVMDNVLNGG 600 DSSYIALLPS GFSIVPNTIS VDKRHKHGYN LVSELVESER EVVVGSIVTI SLQILADSKP 660 TSHVHVHSIE SMKSLIIYTL EKIKAAMNC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PDX3 | 0.0 | A0A0K9PDX3_ZOSMR; Homeobox-leucine zipper protein 3 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1203 | 37 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 1e-169 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma29g01030.1 |