PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma29g00760.1

Common Name

ZOSMA_29G00760

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NAC

Protein Properties

Length: 325aa MW: 37314.7 Da PI: 5.4991

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma29g00760.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177	5.2e-55	20	147	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhP dee++++yL +kv ++++++ ++i evd++k+ePwdLp k+k +ekew+fF++rd+ky+tg r+nrat++gyWkatgkdke+++ Zosma29g00760.1 20 LPPGFRFHPMDEEIITHYLWEKVLDNSFTA-TAIGEVDLNKCEPWDLPGKAKMGEKEWFFFCQRDRKYPTGMRTNRATEAGYWKATGKDKEIFK 112 79***********************999.88***********99999************************************* PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 kg+l+g+kktLvfy+grapkgekt+Wv+he+rle Zosma29g00760.1 113 GKGNLIGMKKTLVFYTGRAPKGEKTNWVIHEFRLE 147 ******************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-61	15	171	IPR003441	NAC domain
PROSITE profile	PS51005	58.09	20	171	IPR003441	NAC domain
Pfam	PF02365	6.4E-27	21	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MNMMEGDGDG DHHGHGSLCL PPGFRFHPMD EEIITHYLWE KVLDNSFTAT AIGEVDLNKC 60 EPWDLPGKAK MGEKEWFFFC QRDRKYPTGM RTNRATEAGY WKATGKDKEI FKGKGNLIGM 120 KKTLVFYTGR APKGEKTNWV IHEFRLEGKS SYNRLPPNSM YEWVVCRVFH KDSEIKMIRS 180 SCESNEMMMM MMARGNTFSM NSSLVDEFLV SPTLPPLVET STDHHHHQDQ DHDYTTTITT 240 TMDPNSSTSQ FYTHHNQPFL TDTQNNNYNF DQMPDYSHQT TLQMSVASQE TAMSTDQNPE 300 ISSLGLEIGC GHYYDDDGFE NLWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-53	18	173	18	170	NAC domain-containing protein 19
3swm_B	2e-53	18	173	18	170	NAC domain-containing protein 19
3swm_C	2e-53	18	173	18	170	NAC domain-containing protein 19
3swm_D	2e-53	18	173	18	170	NAC domain-containing protein 19
3swp_A	2e-53	18	173	18	170	NAC domain-containing protein 19
3swp_B	2e-53	18	173	18	170	NAC domain-containing protein 19
3swp_C	2e-53	18	173	18	170	NAC domain-containing protein 19
3swp_D	2e-53	18	173	18	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020276002.1	1e-100	NAC domain-containing protein 79-like
Refseq	XP_021658802.1	1e-99	NAC domain-containing protein 92-like
Swissprot	Q9FK44	5e-94	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A0K9PDU3	0.0	A0A0K9PDU3_ZOSMR; NAC domain-containing protein 4
STRING	EOY10726	1e-98	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1862	38	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	5e-93	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	Zosma29g00760.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]