PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma29g00330.1 | ||||||||
Common Name | ZOSMA_29G00330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 193aa MW: 22826.9 Da PI: 8.5857 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.3 | 1.7e-20 | 52 | 107 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k+ ++t++q+ eLe++F++++ p+ +++ L+kklgL+ +qV +WFqNrR k+k Zosma29g00330.1 52 RKKKPRHTHQQVGELEAFFKECPSPDFNQIISLSKKLGLKMKQVIYWFQNRRSKMK 107 788999************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-17 | 37 | 107 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.8E-18 | 38 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.451 | 49 | 109 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.1E-17 | 51 | 113 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 5.3E-18 | 52 | 107 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.73E-14 | 52 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 193 aa Download sequence Send to blast |
MSMKNEAADG DFEGDFFDKE GEYEYDEHEY DEYEYESDSN KRHKVDELST RRKKKPRHTH 60 QQVGELEAFF KECPSPDFNQ IISLSKKLGL KMKQVIYWFQ NRRSKMKVIL GHQENVFLRE 120 KNDRLRYENM LLIEAPKTPM CKNCKKKSID DLRIKNAHLK EQLERVRSLI KKSIDVSSSS 180 FNNFPCDGGF KN* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 50 | 55 | RRKKKP |
2 | 50 | 56 | RRKKKPR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PBM8 | 1e-140 | A0A0K9PBM8_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00730.1 | 1e-35 | HD-ZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma29g00330.1 |