PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma294g00240.1
Common NameZOSMA_294G00240
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARR-B
Protein Properties Length: 658aa    MW: 71074.5 Da    PI: 5.3702
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma294g00240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.11.4e-26210263155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kpr++W+ eLH++Fv av+qL G++kA Pk+il+lm+ + Lt+e+v+SHLQkYRl
  Zosma294g00240.1 210 KPRVVWSIELHRKFVAAVNQL-GIDKAMPKRILDLMNDEKLTRENVASHLQKYRL 263
                       79*******************.********************************8 PP
2Response_reg74.44.3e-25211291109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl vdD+++ ++ll+ +l++ +y +v+++ ++ +al+ll++++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++++++++ + + + 
  Zosma294g00240.1  21 VLAVDDDRACLKLLEALLRRCQY-HVTVTNQAIDALKLLRDNKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNSDPKAVMKGIT 111
                       799********************.***************777777*******************87754.558******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d+l Kp+  eel +
  Zosma294g00240.1 112 HGACDYLLKPVRLEELKN 129
                       ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.9E-1581657IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23002.6E-4118142No hitNo description
SuperFamilySSF521723.98E-3518143IPR011006CheY-like superfamily
SMARTSM004482.8E-3019131IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.21320135IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2221129IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.40E-2622134No hitNo description
PROSITE profilePS5129410.514207266IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-28208268IPR009057Homeodomain-like
SuperFamilySSF466893.4E-18208267IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-23210263IPR006447Myb domain, plants
PfamPF002491.6E-5212262IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MTMENTRVVG SADHFPVGLR VLAVDDDRAC LKLLEALLRR CQYHVTVTNQ AIDALKLLRD  60
NKNKFDLVIS DVHMPDMDGF KLLELVGLEM DLPVIMLSGN SDPKAVMKGI THGACDYLLK  120
PVRLEELKNI WQHVVRRKRF DSRDVNSYDH VDEDTDADGS KLPISHHAHA PGPTASSELN  180
TERSSRKRKD QDEGEDDDFD DNDDSSMQKK PRVVWSIELH RKFVAAVNQL GIDKAMPKRI  240
LDLMNDEKLT RENVASHLQK YRLYLKRISS VTSHQANMVA ALGGKDSPYL QIGSSLENAR  300
NNYHSFTTSG NLSTLASFQQ GQGQGCGGSG GMFGILNCPT GPSASGLYNL ASSGMIQLGY  360
GRSNNNPPTI HDLGRLQQSI SFSGGGTQAQ APKMSCSSDV GALSPVANSF LDTLKQPSQP  420
KQHSGLFNNQ PILASTSTPT SRIAATLSGD PFEMKTGSSS IQTDEFCTGS RNAPAWSGII  480
NDTWYENLAS SSKLGEIVGR NNPNMKANTC SDDMLASLPL STTDDRLGLS VSDMIAAGGS  540
GSKPSSWFEG TVQMTNFNYN SPANSTLVGT CNREDFIING VTTNDDNMVN GSFNLAPVYT  600
TQNSELDQVV GGTKMQGGGG GGGGFDGLIS AIVKRERDEV LMEGDIGCDI YSLETCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-25206269164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotB8B3I41e-126ORR22_ORYSI; Two-component response regulator ORR22
SwissprotQ5SML51e-126ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLA0A0K9PEA30.0A0A0K9PEA3_ZOSMR; Two-component response regulator
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-111response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]