PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma291g00180.1
Common NameZOSMA_291G00180
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family AP2
Protein Properties Length: 427aa    MW: 47750.6 Da    PI: 8.5843
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma291g00180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.7e-17106165155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Zosma291g00180.1 106 SIYRGVTRHRWTGRYEAHLWDkTTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 165
                       57*******************777744468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.3E-12106165IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-17106175IPR016177DNA-binding domain
PROSITE profilePS5103219.981107173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-15107174IPR001471AP2/ERF domain
SMARTSM003805.2E-25107179IPR001471AP2/ERF domain
PRINTSPR003673.6E-5108119IPR001471AP2/ERF domain
PRINTSPR003673.6E-5155175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MTVKPWIPLC QRPQKSETLR PTNSLHSTPT TARSSSIMVK SASESAASAA MKVEAEEGLG  60
KRRISVPDQL YIGGMKKPRR ERFLGCTTAK ERISKMPPCV AGKRSSIYRG VTRHRWTGRY  120
EAHLWDKTTW NQNQNKKGKQ VYLGAYDDEE AAARAYDLAA LKYWGAGTLI NFPVSDYSRD  180
LEEMQMISKE DYLISLRRKS SAFSRGFPKC RGASRHVQNS NLEPSLGRML ADDPSIEKKY  240
GNDRKIDLTG YIRWWGSPKT RSSNEKQIAN SEAINEELLA FECTKQSMEP YRFPSLGVSS  300
NDALPHGTSS VKACNILSCS AAFKNFLHRL SETCTHDDTE TGYDRNFVPI HNLNEASGER  360
QADISVNYSE LSRCSTGLTD WNPVDPVPDA LFWNSLIQPA EIPSSSLSAA LRKTEAGSPY  420
TYDDEE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008802631.11e-124AP2-like ethylene-responsive transcription factor At2g41710 isoform X1
SwissprotQ8GWK26e-88AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A0K9PCE70.0A0A0K9PCE7_ZOSMR; AP2-like ethylene-responsive transcription factor
STRINGXP_008802631.11e-124(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.12e-85AP2 family protein